CX291758

Overview
NameCX291758
Unique NameCX291758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 466
            +LLDVKPWDDETDMK++E  VR+++MEGLLWGASKL PVGYGI KLQIM  I DD VSVD L E+
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 203          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.189e-21
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIE 463
            +LLDVKPWDDETDM KLEE VRS+QMEGL+WGASKL PVGYGIKKLQI   + DD V  D L E
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTDVLEE 208          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEY 496
            VLLDVKPWDDETDMK++E  VR+++M+GLLWGASKL PVGYGI KLQIM  I DD VS+D      LL+E I E+
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSID------LLQEKIEEF 207          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 466
            +LLDVKPWDDETDM KLEE VR+VQM+GL+WG+SKL PVGYGIKKLQI   + DD V  D L EE
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEE 246          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 5.902e-21
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 466
            +LLDVKPWDDETDM KLEE +RS+QM+GLLWG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEK 208          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 7.709e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D ++EE +     +EYVQ
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQI--TAFDEYVQ 215          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQ
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQ 215          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQ
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQ 215          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.717e-20
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQ
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQ 215          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.243e-20
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+    E   +YVQ
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFE---DYVQ 215          
The following BLAST results are available for this feature:
BLAST of CX291758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_BOMMO6.972e-2273.85Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_XENTR1.189e-2175.00Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_DROME1.553e-2166.67Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1D_XENLA3.460e-2172.31Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENLA5.902e-2170.77Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1B_BOVIN7.709e-2163.64Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_MOUSE1.717e-2063.64Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN1.717e-2063.64Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK1.717e-2063.64Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT2.243e-2063.64Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionC04004D02SK FlavFr1 Citrus clementina cDNA clone C04004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291758 ID=CX291758; Name=CX291758; organism=Citrus clementina; type=EST; length=504bp
TGAATATGTCAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAA
GGATCTCTGGCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCT
GCTCCTGTTGCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGA
TGATGACGACGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAA
AGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAG
AAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGA
TGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGG
AAGGATTACTCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATC
AAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGA
CACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAATGAATATGTCC
AGAG
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