CX291758

Overview
NameCX291758
Unique NameCX291758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 466
            V+LDVKPWDDETD+ ++E+ VRS++M+GL+WG +KL P+GYGIKKLQI+  I D  VSVD LIE+
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 193          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            +LLDVKPWDDETDM +LE+ VRS++M+GL+WGASKL  VGYGIKKL I L + D  VS D L E+    +   +YVQ
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQ 206          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.171e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQ 502
            ++LDVKPWDDETD+K +E  +R +  +GLLWGASK  PV +GI+KL I   + DD VS+D L EE    E + ++VQ
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQ 246          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.965e-16
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTI 427
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+SKL PVGYGI+KLQI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.837e-15
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTL 457
            V LDVKPWDDETD+ +L   V++++MEGL WGA +  PVG+GIKKLQI L + D LVS+D L
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL 191          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTL 457
            V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D L
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL 184          
BLAST of CX291758 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  272 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIE 463
            +L DVKPWDD  D++ L   + +V+ +GLLWG  KL PV +G+KKLQ ++ I DD V  D L E
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEE 202          
The following BLAST results are available for this feature:
BLAST of CX291758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B1_CAEEL7.215e-1964.62Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_DICDI6.108e-1859.74Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1D_DROME5.171e-1751.95Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP1.965e-1671.15Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL2.837e-1561.29Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST1.408e-1454.84Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR3.835e-1250.0025 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionC04004D02SK FlavFr1 Citrus clementina cDNA clone C04004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291758 ID=CX291758; Name=CX291758; organism=Citrus clementina; type=EST; length=504bp
TGAATATGTCAATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAA
GGATCTCTGGCGTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCT
GCTCCTGTTGCTACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGA
TGATGACGACGATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAA
AGAAGGCTGCCGAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAG
AAAGAATCTGGCAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGA
TGAGACTGACATGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGG
AAGGATTACTCTGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATC
AAGAAATTGCAAATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGA
CACCCTCATTGAGGAACACCTGCTGGAAGAACCAATTAATGAATATGTCC
AGAG
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