CX291759

Overview
NameCX291759
Unique NameCX291759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length243
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.191e-16
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 2
Query:   50 MSLIPSIFGNR---SVLDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MS+IPS F N    ++ DPFS DVW P       S S E S   +A+VDW+ETPEAHVFKADLPGLKKEEVK
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVK 72          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAP---------LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP+ FG R  +V DPFS DVW P         L S+S      E S F S +VDWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVK 80          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 47/77 (61.04%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPS F  R  +V DPFS DVW PL            S   E   F S +VDWKETPEAHVFKADLPGLKKEEVK
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVK 77          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   50 MSLIPSIFGNR-----SVLDPFSSDVWAP---LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPS FGN      ++ DPFS DVW P   L   S+  S  A+A+VDWKET EAHVFKADLPG+KKEEVK
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVK 72          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.654e-16
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 2
Query:   50 MSLIPSIFGNR---SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP IFG+R   S+ DPFS DV+ P        ++S E S FA+ ++DWKETPE HVFK DLPGLKKEEVK
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MS+IPS FG R  +V DPFS DVW P     L +SS      E + F +  +DWKETP+AHVFKADLPGLKKEEVK
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVK 76          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.528e-16
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPSIFG R  +V DPFS DV+ P            + + +V+ F +A+VDW+ETPEAHVFKADLPGL+KEEVK
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVK 76          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.720e-15
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   50 MSLIPSIFGN--RSVLDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIPSIFG    +V DPFS D+W        P  S S E S F + +VDWKET EAHV KAD+PGLKKEEVK
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.456e-14
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+KKEEVK
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVK 69          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.456e-14
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+KKEEVK
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVK 69          
The following BLAST results are available for this feature:
BLAST of CX291759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HS17B_ARATH1.191e-1661.1117.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP16_SOYBN1.556e-1660.0018.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.556e-1661.0418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS17A_ARATH1.556e-1662.5017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_SOLLC2.654e-1660.2717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_DAUCA4.528e-1659.2117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17C_ARATH4.528e-1657.8917.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP15_SOYBN1.720e-1560.2717.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_ORYSJ1.456e-1454.4116.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.456e-1454.4116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC04004D03SK FlavFr1 Citrus clementina cDNA clone C04004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291759 ID=CX291759; Name=CX291759; organism=Citrus clementina; type=EST; length=243bp
GCACGAGGACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAA
TGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGCTCGACCCATTT
TCCTCGGACGTTTGGGCGCCCCTTGGCTCATCCAGCAATGAGGTGTCAAC
ATTTGCCAGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTT
TCAAGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGT
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