CX291759

Overview
NameCX291759
Unique NameCX291759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length243
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.238e-14
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   50 MSLIPSIFGNR--SVLDPFSSDVWAPLGS-----SSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MS+IPS F ++  ++ DPFS D W P         + E +   +A++DWKETPEAHV KADLPG+KKEEVK
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVK 71          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.103e-13
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPL--------GSSS------------NEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPFS D+W P         GSSS            +E + FA A++DWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVK 80          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.747e-13
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPL-------GSSS------NEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPFS D+W P        GS S      ++ + FA A++DWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    2 SMIRRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVK 73          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.587e-13
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   50 MSLIPSIF---GNRS-VLDPFSSD-VWAPL------------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            MSLIP+ +   G RS + DPFS D +W P               ++ E + FA+A++DWKETPEAHVFKADLPG+KKEEVK
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVK 81          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.685e-13
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPLGS--------------------SSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPFS D+W P                       +S+E + FA A++DWKETPEAHVFKAD+PGLKKEEVK
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVK 80          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.119e-13
Identity = 39/62 (62.90%), Postives = 42/62 (67.74%), Query Frame = 2
Query:   92 DPFSSDVWAP----------LGSSS--NEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            DPFS DVW P          L +SS   E S F S ++DWKETPEAHVFKADLPGLKKEEVK
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVK 62          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.780e-12
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            SI    +V DPF+ D+WA            +   S+E + FA+A+VDWKETPEAHVFK DLPG+KKEEVK
Sbjct:    2 SIVRRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVK 70          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.325e-12
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPL--------GSSSN----------EVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +  DPFS D+W P+        GSSS+          + + FA A++DWKETPE HVFKAD+PGLKKEEVK
Sbjct:    2 SLIRRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVK 78          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.966e-12
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            SI    +V DPF+ D+WA            +    +E + FA+A++DWKETPEAHVFKADLPG+KKEEVK
Sbjct:    2 SIVRRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVK 70          
BLAST of CX291759 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.180e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2
Query:   65 SIFGNRSVLDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLKKEEVK 241
            S+    +V DPF+ D W P           +S  + + FA+A+VDWKETPE+HVFKADLPG+KKEEVK
Sbjct:    2 SLVRRSNVFDPFA-DFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVK 68          
The following BLAST results are available for this feature:
BLAST of CX291759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HSP11_HELAN4.238e-1452.1117.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17A_ORYSJ2.103e-1350.6317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ2.747e-1352.7817.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_CHERU3.587e-1351.8518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS181_ORYSJ4.685e-1346.8418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_MEDSA6.119e-1362.9018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16A_WHEAT1.780e-1252.8616.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS177_ORYSJ2.325e-1248.0517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT3.966e-1251.4316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS16C_ORYSJ5.180e-1251.4716.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC04004D03SK FlavFr1 Citrus clementina cDNA clone C04004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291759 ID=CX291759; Name=CX291759; organism=Citrus clementina; type=EST; length=243bp
GCACGAGGACGATTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAA
TGTCTTTGATTCCATCTATATTCGGAAACAGGAGCGTGCTCGACCCATTT
TCCTCGGACGTTTGGGCGCCCCTTGGCTCATCCAGCAATGAGGTGTCAAC
ATTTGCCAGTGCTCAAGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTT
TCAAGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGT
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