CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_LEGPC (Lipoyl synthase OS=Legionella pneumophila (strain Corby) GN=lipA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.863e-36
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV+RDDL D G+ H+A+T+R +K+  P   +EAL PDF+G+   V  +  SG++VFA N+ETVE L   VRD+RA ++Q+L+VL  AK Y P   LTKTS+MLG GET ++++ TMD +R   VD++T GQY++P+K H+
Sbjct:  137 VLTSVNRDDLPDGGANHYAKTIRAIKKRSPRTKVEALTPDFQGSERDVAVLLDSGVDVFAQNVETVERLTHPVRDNRAGYQQTLNVLAFAKKYRP-DVLTKTSLMLGLGETDEEIIRTMDDLRTHHVDILTLGQYLQPTKNHL 278          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.884e-36
Identity = 76/145 (52.41%), Postives = 104/145 (71.72%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV--PAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G    V+++  +G +V AHNIETV   Q  VRD RA ++QSL VL    +YV   +   TKTSIMLG GE   +V  T+  +R AGVDV+T GQY++PS+ H+
Sbjct:  104 VLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAGPDVIAHNIETVARRQVPVRDRRAGYEQSLSVL----EYVTRESDIYTKTSIMLGVGEYDHEVYQTLGDLREAGVDVVTLGQYLQPSRSHL 244          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_HALS3 (Probable lipoyl synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lipA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.884e-36
Identity = 76/145 (52.41%), Postives = 104/145 (71.72%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYV--PAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G    V+++  +G +V AHNIETV   Q  VRD RA ++QSL VL    +YV   +   TKTSIMLG GE   +V  T+  +R AGVDV+T GQY++PS+ H+
Sbjct:  104 VLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAGPDVIAHNIETVARRQVPVRDRRAGYEQSLSVL----EYVTRESDIYTKTSIMLGVGEYDHEVYQTLGDLREAGVDVVTLGQYLQPSRSHL 244          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_AERPE (Probable lipoyl synthase OS=Aeropyrum pernix GN=lipA PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 8.331e-36
Identity = 75/142 (52.82%), Postives = 100/142 (70.42%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            +TSVDRDDL D G+ HFA TVR +K L+P+ ++EAL+PDF+G    VR VA SGL V AHNIETVE L   VRD RA ++QSL VL +AK+    G +TK+SI+LG GE   +V+  M  +R+ GVD++   QY RPS++ +
Sbjct:   97 LTSVDRDDLPDGGASHFAATVRAIKRLRPDTIVEALIPDFQGVEEHVRLVAASGLEVLAHNIETVERLTPLVRDRRAGYRQSLRVLEIAKE---EGVVTKSSILLGLGEDKSEVIEAMRDLRSVGVDILVLSQYYRPSRKQL 235          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_DEIRA (Lipoyl synthase OS=Deinococcus radiodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ HFA+TV+ +KE+ P   +EAL PDF GN  CV  V  SG++ +A N+ETV  L   VRD RA++ ++L VL  AK   P   +TKTS+MLG GET +++   M   RAAGVDV+TFGQY+RP+  H+
Sbjct:  125 VLTSVDRDDLPDGGAYHFAKTVKAIKEVNPQTRVEALTPDFGGNTACVDLVLDSGVDTYAQNLETVRRLTHPVRDIRASYDRTLSVLAHAKQARP-DVITKTSLMLGLGETREEIREAMADCRAAGVDVLTFGQYLRPTMHHL 266          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SULSO (Probable lipoyl synthase OS=Sulfolobus solfataricus GN=lipA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.856e-35
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL+D G+ HFA  V+ +KEL P +++E L PDFRGN   V++V  +G++VFAHN+ETV  L   VRD RA+++QSL+VL  A++      + K+SI+LG GET D++V TM  +R+ GV ++   QYMRPS++ +
Sbjct:   95 VITSVDRDDLSDGGAQHFANVVKTVKELNPGIIVEVLTPDFRGNIDAVKKVIDAGVDVFAHNVETVRRLTPIVRDPRASYEQSLNVLKYAEN-----VIKKSSILLGLGETWDEIVETMRDLRSVGVSILVLSQYMRPSRKQL 232          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SULAC (Probable lipoyl synthase OS=Sulfolobus acidocaldarius GN=lipA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.400e-35
Identity = 74/143 (51.75%), Postives = 101/143 (70.63%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD G+ HF+Q V+ +KE+ P++++E L PDF GN   V +V  SG++VFAHN+ETV  L   VRD RA+++QSL VL  AK+ V      K+SI+LG GE+ ++VV TM  +R  GVD++   QYMRPS + +
Sbjct:   93 VITSVDRDDLADGGASHFSQVVKAVKEMNPDVIVEVLTPDFMGNKELVEKVIGSGVDVFAHNVETVRSLTPLVRDARASYEQSLRVLSYAKNVV-----KKSSILLGLGESLEEVVETMKDLRNVGVDILVLSQYMRPSIKQL 230          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MARAV (Lipoyl synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=lipA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.400e-35
Identity = 73/143 (51.05%), Postives = 100/143 (69.93%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ H+A  V  +K+  P + +EAL PDF      V +V  SGL+VFA N+ETV+ L S VRD RA ++++L VL  AK + P   LTKTS+MLG GET ++++ TMD +RA GVD++T GQY+RP+  H+
Sbjct:  138 VLTSVDRDDLPDGGAAHYAACVSAIKQRTPEVAVEALTPDFDAVMSDVEKVVDSGLDVFAQNVETVKRLTSRVRDPRAGYEKTLSVLAHAKKHRP-DVLTKTSLMLGLGETEEEILETMDDLRAIGVDILTLGQYLRPTPNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_HALHL (Lipoyl synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=lipA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.052e-34
Identity = 73/143 (51.05%), Postives = 97/143 (67.83%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ H+AQ VR +K   P+  +EAL PDFRG+   VR V  SGL VFAHN+E V  L   VRD RA ++QSL VL +AK   P G LTK+S+M+G GET  ++    D +  A VD++T GQY++P++ H+
Sbjct:  136 VLTSVDRDDLPDGGAEHYAQCVRAIKADNPDTAVEALTPDFRGDEEAVRTVVDSGLEVFAHNVEVVRRLSPQVRDPRAGYEQSLAVLQVAKRLRP-GVLTKSSLMVGLGETDAEIDEAFDDLLRAEVDIVTLGQYLQPTRNHL 277          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_THET8 (Lipoyl synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=lipA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.970e-34
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D G+ HFA T+R +KE  P +L+EAL PDF+G+   V  V  +   V+A N+ETV  L   VRD RA ++Q+L VL  AK   P   LTK+S+MLG GET ++++  M  +RAAGVD++T GQY+RP+  H+
Sbjct:  134 VLTSVDRDDLPDGGASHFAATIRAIKERAPGVLVEALTPDFQGDLKAVETVLAANPEVYAQNLETVRRLTPKVRDPRAGYEQTLKVLAHAKKVRP-DILTKSSLMLGLGETEEEILEAMRDLRAAGVDILTLGQYLRPTPAHL 275          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_LEGPC2.863e-3650.35Lipoyl synthase OS=Legionella pneumophila (strain ... [more]
LIPA_HALSA4.884e-3652.41Probable lipoyl synthase OS=Halobacterium salinari... [more]
LIPA_HALS34.884e-3652.41Probable lipoyl synthase OS=Halobacterium salinaru... [more]
LIPA_AERPE8.331e-3652.82Probable lipoyl synthase OS=Aeropyrum pernix GN=li... [more]
LIPA_DEIRA1.421e-3552.45Lipoyl synthase OS=Deinococcus radiodurans GN=lipA... [more]
LIPA_SULSO1.856e-3550.35Probable lipoyl synthase OS=Sulfolobus solfataricu... [more]
LIPA_SULAC5.400e-3551.75Probable lipoyl synthase OS=Sulfolobus acidocaldar... [more]
LIPA_MARAV5.400e-3551.05Lipoyl synthase OS=Marinobacter aquaeolei (strain ... [more]
LIPA_HALHL2.052e-3451.05Lipoyl synthase OS=Halorhodospira halophila (strai... [more]
LIPA_THET85.970e-3450.35Lipoyl synthase OS=Thermus thermophilus (strain HB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
back to top