CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PYRAE (Probable lipoyl synthase OS=Pyrobaculum aerophilum GN=lipA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.054e-30
Identity = 71/145 (48.97%), Postives = 99/145 (68.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRP--SKRHM 452
            V+TSV RDDL D G+  FA  V+KL+E+    ++E LVPDF G+   V+ V  SG +VFAHN+ETV  L   VRD RA +++SL VL  AK++     LTK+ +MLG GET ++VV T++ +R A VD++T GQY++P  S RH+
Sbjct:   97 VVTSVARDDLPDGGASVFAAVVKKLREV--GCVVEVLVPDFGGSPASVKTVVSSGPDVFAHNVETVRRLTPLVRDRRAGYERSLSVLKYAKEF--GAPLTKSGLMLGLGETFEEVVETLEDLRRADVDIVTIGQYIKPSGSPRHL 237          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MOOTA (Lipoyl synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=lipA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.987e-29
Identity = 64/143 (44.76%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV RDDL D G+GHFA T+  L++  P   IE L PDFRG+   +  VA++  ++F HN+ETV  L   VR  +A++++SLDVL   K+ + A   TK+ +M+G GE+ ++V++ M  +RA   D++T GQY+RPS RH+
Sbjct:  107 VVTSVTRDDLPDGGAGHFAATITALRQALPGAYIEVLTPDFRGSRAALAAVARARPDIFNHNVETVPRLYPDVRP-QADYRRSLDVLKQMKE-LDATIYTKSGLMVGVGESREEVLAVMADLRAVNCDILTIGQYLRPSPRHL 247          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ANATD (Lipoyl synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=lipA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.390e-29
Identity = 67/142 (47.18%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSV RDDL D G+ HFA+ +R +K  +P   IE L+PDF+G+   V +V ++  +V AHNIET+E L   VR   A++K+SLDVL M K+ +     TK+ IM+G GET D+V   ++ +R A  D +T GQY+ PSK H
Sbjct:  100 VITSVTRDDLPDGGASHFAECIRSIKGKRPYTKIEVLIPDFKGSFESVSKVVEASPDVVAHNIETIERLYPCVRP-LASYKRSLDVLRMVKE-IDKNIFTKSGIMVGLGETKDEVKKALEDLRNAECDFVTIGQYLSPSKNH 239          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_UNCMA (Probable lipoyl synthase OS=Uncultured methanogenic archaeon RC-I GN=lipA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.428e-29
Identity = 66/141 (46.81%), Postives = 92/141 (65.25%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKR 446
            VITSVDRDDL D G+GH+A  +R +KE  P   +EA++PDF G    + +V  +  +V +HNIETVE L  +VRD RA + +SLDVL   K   P   LTK+S++LG GE   ++   +  ++ A VD++T GQY+RPS R
Sbjct:  103 VITSVDRDDLPDYGAGHYAACIRAVKEQLPGARVEAIIPDFTGRLDLLEQVVDARPDVISHNIETVERLSPSVRDRRAGYYRSLDVLRDVKRVNP-HMLTKSSLLLGMGEEDIEIKEALHDLQEARVDIVTLGQYLRPSIR 242          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ANAPZ (Lipoyl synthase OS=Anaplasma phagocytophilum (strain HZ) GN=lipA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.428e-29
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSK 443
            VITSVDRDDL D G+ HFA+ +R++++  PN+ IE L PDF+G  G V  +A +  +V+ HN+ETV  L + VR  RA +  SL +L   KD    G  TK+ +MLG GE  ++V   MD +R AGVD +  GQY++P+K
Sbjct:   98 VITSVDRDDLPDGGASHFAKCIREIRKRDPNVTIEILTPDFQGKPGAVDVIASARPDVYNHNLETVPRLYARVRP-RAKYFNSLQLLQQVKDKT-QGVFTKSGLMLGLGEQKEEVYQVMDDLRCAGVDFLVLGQYLQPTK 235          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SYMTH (Lipoyl synthase OS=Symbiobacterium thermophilum GN=lipA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.552e-29
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV RDDL+D G+  FA+T+R ++   P   +E L+PDF GN   +  V  +  +V  HNIETV  L   VR  RA + +SL++L  AK+  P    TK+SIM+G GET  ++   MD +RAAGVD++TFGQY+RP+ RH+
Sbjct:  120 VVTSVARDDLSDGGASIFAETIRAIRRKNPFTGVEVLIPDFGGNWDALAVVMDAEPDVLNHNIETVRRLSDRVRS-RAKYDRSLELLRRAKEMKP-HVSTKSSIMVGLGETMQELYEAMDDLRAAGVDIVTFGQYLRPTARHL 260          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_THETN (Lipoyl synthase OS=Thermoanaerobacter tengcongensis GN=lipA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.197e-28
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSV RDDL D G+ HFA+T+ +LK+L P + +E LVPDF GN   +R V ++  +V  HN+ETV  L S VR  +A++ +SL++L   K+  P   LTK+ IM+G GET ++V+  M  +R    D+MT GQY+RPS +H+
Sbjct:   98 VVTSVTRDDLPDGGASHFAKTIYELKKL-PGVTVEVLVPDFMGNEEAIRTVVEAKPDVINHNVETVPRLYSRVRP-KADYIRSLNLLKKVKELDPL-ILTKSGIMVGLGETEEEVIEVMKDLRDIDCDMMTIGQYLRPSHKHI 237          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PYRCJ (Probable lipoyl synthase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=lipA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.870e-28
Identity = 64/138 (46.38%), Postives = 89/138 (64.49%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRP 437
            VITSVDRDDL D G+  FA  V+ +K   P   +E L PDF G+   V  V ++G +V+AHN+ETV  L   VRD RA++  SL VL MAK+    G +TK+ +M+G GET D+V+  +  +R   VD++T GQY++P
Sbjct:   98 VITSVDRDDLPDGGASQFASVVKAVKARAPWAKVEVLTPDFGGSAEAVASVVEAGPDVYAHNLETVRRLTPLVRDRRASYDVSLRVLKMAKE---LGAVTKSGLMVGLGETFDEVLEALSDLRRVDVDIVTIGQYLKP 232          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_RUBXD (Lipoyl synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=lipA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.393e-28
Identity = 63/143 (44.06%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSV+RD+L D G+  FA T+R ++   P   +E L PDF+G+   ++ V  +  + F HNIETV  L  AVR  +A + +SL+VL  AK+  P G LTK+  M+G GE  +++V TM  +R  GVD++T GQY+RP++ H+
Sbjct:  127 VITSVNRDELPDGGASVFAATIRAIRREVPGCAVEVLTPDFKGDRDAIKTVIDARPDTFNHNIETVPRLYPAVRP-QAKYGRSLEVLRYAKELDP-GVLTKSGFMVGLGEVEEEIVRTMRDLREHGVDILTIGQYLRPTENHL 267          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_BACTN (Lipoyl synthase OS=Bacteroides thetaiotaomicron GN=lipA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.393e-28
Identity = 62/142 (43.66%), Postives = 91/142 (64.08%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            V+TSVDRDDL D G+GH+A T+R++K L P   IE L+PDF+G    V  V ++  ++ +HN+ETV  +   VR   AN+  SL V+        +GT +K+ IM+G GETP +V + MD + A G  ++T GQY++P+ RH
Sbjct:  101 VVTSVDRDDLPDLGAGHWAHTIREIKRLNPQTTIEVLIPDFQGRMELVDLVIEANPDIISHNMETVRRISPLVRS-AANYDTSLQVI---GHIARSGTKSKSGIMVGLGETPQEVETIMDDLLAVGCQILTIGQYLQPTHRH 238          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PYRAE1.054e-3048.97Probable lipoyl synthase OS=Pyrobaculum aerophilum... [more]
LIPA_MOOTA1.987e-2944.76Lipoyl synthase OS=Moorella thermoacetica (strain ... [more]
LIPA_ANATD3.390e-2947.18Lipoyl synthase OS=Anaerocellum thermophilum (stra... [more]
LIPA_UNCMA4.428e-2946.81Probable lipoyl synthase OS=Uncultured methanogeni... [more]
LIPA_ANAPZ4.428e-2946.43Lipoyl synthase OS=Anaplasma phagocytophilum (stra... [more]
LIPA_SYMTH7.552e-2946.85Lipoyl synthase OS=Symbiobacterium thermophilum GN... [more]
LIPA_THETN2.197e-2846.15Lipoyl synthase OS=Thermoanaerobacter tengcongensi... [more]
LIPA_PYRCJ2.870e-2846.38Probable lipoyl synthase OS=Pyrobaculum calidifont... [more]
LIPA_RUBXD6.393e-2844.06Lipoyl synthase OS=Rubrobacter xylanophilus (strai... [more]
LIPA_BACTN6.393e-2843.66Lipoyl synthase OS=Bacteroides thetaiotaomicron GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
back to top