CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SALEP (Lipoyl synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P    TK+ +M+G GET  +++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHPE-IPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SALDC (Lipoyl synthase OS=Salmonella dublin (strain CT_02021853) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P    TK+ +M+G GET  +++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHPE-IPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SALCH (Lipoyl synthase OS=Salmonella choleraesuis GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P    TK+ +M+G GET  +++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHPE-IPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_SALA4 (Lipoyl synthase OS=Salmonella agona (strain SL483) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAK-SGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +  ++   P + IE LVPDFRG      ++   +  +VF HN+E V  +   VR   A++  SL +L   K+  P    TK+ +M+G GET  +++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCITAIRAKSPEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRP-GADYNWSLKLLERFKEAHPE-IPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_RALEJ (Lipoyl synthase OS=Ralstonia eutropha (strain JMP134) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ H+   + + +EL P   IE LVPDFRG      ++ ++   +V  HN+ETV  L    R   A++  SL +L   K   P    TK+ +M+G GET ++++  M  +RA  +D++T GQY+ PS  H+
Sbjct:  142 VITSVDRDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDILQACPPDVMNHNMETVPRLYKQARP-GADYAHSLKLLQEFKRRNP-NVPTKSGLMVGLGETDEEILEVMRDMRAHDIDMLTIGQYLAPSNHHL 283          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_LARHH (Lipoyl synthase OS=Laribacter hongkongensis (strain HLHK9) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  ++ ++   P   IE LVPDFRG      ++ + +  +V  HN+ET   L    R   A++  SL +L   K   P  T TK+ IM+G GET ++V+  +  +RA  VD++T GQY++PS  H+
Sbjct:  127 VITSVDRDDLRDGGAQHFADCIQAIRASSPATRIEVLVPDFRGRLELALDILSATPPDVMNHNLETAPRLYKQARP-GADYAHSLQLLKDYKTRNPDVT-TKSGIMVGLGETDEEVLEVLADLRAHDVDMLTIGQYLQPSNGHL 268          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_CUPTR (Lipoyl synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKS-GLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ H+   + + +EL P   IE LVPDFRG      ++ ++   +V  HN+ETV  L    R   A++  SL +L   K   P    TK+ +M+G GET ++++  M  +RA  +D++T GQY+ PS  H+
Sbjct:  145 VITSVDRDDLRDGGAQHYVDCISQTRELSPATRIEVLVPDFRGRLDKALDILQACPPDVMNHNMETVPRLYKQARP-GADYAHSLKLLQEFKRRNP-NVPTKSGLMVGLGETDEEILEVMRDMRAHDIDMLTIGQYLAPSNHHL 286          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_CHLAB (Lipoyl synthase OS=Chlamydophila abortus GN=lipA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.398e-21
Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+T V RDDL D G+    + +  L +  P   +E L  DF+GN   +  +  SGL ++ HN+ETVE L   VR H+A +++SL +L  A  Y+P     K+ IM+G GE   +V  T+  +   GV ++T GQY+RPS+ H+
Sbjct:  116 VLTMVARDDLEDGGASCLVRIIDTLHKELPESTVEMLASDFQGNVDALHTLLDSGLTIYNHNVETVERLTPVVR-HKATYRRSLFMLEQAALYLP-DLKIKSGIMVGLGEQESEVKQTLKDLADHGVRIVTIGQYLRPSRLHI 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_THISH (Lipoyl synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.438e-21
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLN-----VFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HF   +R  +   P++ IE LVPDFRG      +VA + LN     VF HN+ETV  L    R   +++  SLD++   K+  P    TK+ +MLG GE   +V + M  +R  G D++T GQY++PS  H+
Sbjct:  130 VITSVDRDDLRDGGARHFVDCIRTTRAHSPDIRIEILVPDFRGR----MDVALAILNEAPPDVFNHNLETVPRLYREARP-GSDYDWSLDLIQRFKETHPQ-VPTKSGLMLGLGEEMHEVEAVMRDLRDHGCDMLTLGQYLQPSLHHL 271          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_NITEC (Lipoyl synthase OS=Nitrosomonas eutropha (strain C91) GN=lipA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.438e-21
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAG--TLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSVDRDDL D G+ HFA  +R ++   P   IE LVPDFRG     + +++    +V  HN+ETV  L    R   A++  SL +L   KD+  A     TK+ +MLG GET ++++  M  +RA  V+++T GQY++PS  H
Sbjct:  125 VITSVDRDDLRDGGAQHFADCIRAIRAQSPQTRIEILVPDFRGRLEIALEKLSACPPDVMNHNLETVPRLYKQCRP-GADYVHSLQLL---KDFKAASPHIPTKSGLMLGLGETDEEIIGVMQDLRAHQVNMLTIGQYLQPSIGH 265          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_SALEP3.398e-2139.58Lipoyl synthase OS=Salmonella enteritidis PT4 (str... [more]
LIPA_SALDC3.398e-2139.58Lipoyl synthase OS=Salmonella dublin (strain CT_02... [more]
LIPA_SALCH3.398e-2139.58Lipoyl synthase OS=Salmonella choleraesuis GN=lipA... [more]
LIPA_SALA43.398e-2139.58Lipoyl synthase OS=Salmonella agona (strain SL483)... [more]
LIPA_RALEJ3.398e-2139.58Lipoyl synthase OS=Ralstonia eutropha (strain JMP1... [more]
LIPA_LARHH3.398e-2140.97Lipoyl synthase OS=Laribacter hongkongensis (strai... [more]
LIPA_CUPTR3.398e-2139.58Lipoyl synthase OS=Cupriavidus taiwanensis (strain... [more]
LIPA_CHLAB3.398e-2138.46Lipoyl synthase OS=Chlamydophila abortus GN=lipA P... [more]
LIPA_THISH4.438e-2141.89Lipoyl synthase OS=Thioalkalivibrio sp. (strain HL... [more]
LIPA_NITEC4.438e-2141.38Lipoyl synthase OS=Nitrosomonas eutropha (strain C... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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