CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_BACHD (Lipoyl synthase OS=Bacillus halodurans GN=lipA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.393e-28
Identity = 65/143 (45.45%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VIT+V RDDL D G+G FA+TVR ++   P   IE L  D  GN+  ++ +  +  N+  HNIETV  L   VR  RA +++SL+ L  AK+  P    TK+S+M+G GET D+++ TMD +RA  VD+MT GQY++P+K+H+
Sbjct:  105 VITAVARDDLKDGGAGVFAETVRAVRRRNPFCTIEVLPSDMMGNDDNLKTLMDARPNILNHNIETVRRLTPRVRA-RATYERSLEFLRRAKEMQP-DIPTKSSLMIGLGETKDEIIETMDDLRANNVDIMTIGQYLQPTKKHL 245          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_RHOCS (Lipoyl synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=lipA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.350e-28
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            V+TSVDRDDL D G+GHFA+T+R ++   P   IE L PDF    G V  V ++  +VF HN+ET   L   +R   A +  SL +L   K+  P+   TK+ IM+G GET ++V   MD +RAA VD MT GQY+ P+ +H
Sbjct:  118 VVTSVDRDDLEDGGAGHFARTIRAIRAAAPGTTIEVLTPDFMKKKGAVETVVEARPDVFNHNLETAPRLYPTIRP-GARYFTSLQLLARVKEIDPS-MFTKSGIMVGLGETKEEVFQVMDDLRAADVDFMTIGQYLAPTPKH 257          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_RHORT (Lipoyl synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=lipA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.424e-27
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD G+GHF + + +++   P+  IE L PDFR    G +  V ++G +VF HN+ETV  L   +R   A +  SL +L   K   P G  TK+ IM+G GET ++V+  MD +R+AGVD +T GQY++P+ +H+
Sbjct:  117 VITSVDRDDLADGGAGHFHRCITEVRSRAPSCSIEVLTPDFRDKPQGALARVVEAGPDVFNHNLETVPRLYPTIRPG-ARYFHSLKLLDRVKTIDP-GVFTKSGIMVGLGETREEVLQVMDDMRSAGVDFLTIGQYLQPTLKHV 258          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_NEOSM (Lipoyl synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=lipA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.424e-27
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  VR+++E  P   IE L PDF G  G    +  +  +VF HN+ETV  L   +R  +A +  SL +L   K   P    TK+ +MLG GE   +V+  MD +R AG+D +T GQY+RPSK+HM
Sbjct:   99 VITSVDRDDLDDGGAEHFASCVRRIRETSPGTSIEVLTPDFLGKVGARDIIIAAAPDVFNHNVETVPRLHPKIR-IKARYFNSLSLLEEVKRKDPR-IFTKSGLMLGLGEERSEVLQVMDDMRVAGIDFLTIGQYLRPSKKHM 239          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAE (Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  138 VITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEAB (Lipoyl synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lipA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  138 VITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA8 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=lipA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET D+V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  138 VITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDDEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PARD8 (Lipoyl synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=lipA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ H+  T+R +KE+ P   +E L+PDF+G    V +V  +   + +HN+ETV  +   VR   A +  SL VL   +     G + KT IM+G GET D+V+  MD V  AGV V+T GQY++PS++++
Sbjct:  101 VITSVDRDDLPDLGASHWVNTIRTIKEVNPQTTVEVLIPDFQGRLDLVDQVVDAAPEIISHNMETVRRISPQVRS-AAKYDVSLSVL---RRIAERGVVAKTGIMVGLGETEDEVLELMDDVLQAGVSVLTIGQYLQPSRKNI 239          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_BACFN (Lipoyl synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.429e-27
Identity = 60/145 (41.38%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   15 ARGVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +  VITSVDRDDL D G+ H+AQT+R++K L P    E L+PDF+G    V +V K+   + +HN+ETV+ +   VR   AN+  SL+V+   +    +G   K+ IM+G GETP +V   MD + + G  ++T GQY++P+ +H
Sbjct:  100 SHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQGRKELVDQVIKACPEIISHNMETVKRISPQVRS-AANYHTSLEVI---RQIAESGITAKSGIMVGLGETPAEVEELMDDLISVGCKILTIGQYLQPTHKH 240          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEU5 (Lipoyl synthase OS=Pseudomonas stutzeri (strain A1501) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 63/144 (43.75%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L P++ +E LVPD+RG      ++ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP G  TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  136 VITSVDRDDLRDGGAQHFADCLREIRKLSPSIQLETLVPDYRGRMEIALDITATEPPDVFNHNLETVPRLYKSSRP-GSDFEWSLDLLEKFKQRVP-GVPTKSGLMLGLGETDEEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 277          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_BACHD6.393e-2845.45Lipoyl synthase OS=Bacillus halodurans GN=lipA PE=... [more]
LIPA_RHOCS8.350e-2845.07Lipoyl synthase OS=Rhodospirillum centenum (strain... [more]
LIPA_RHORT1.424e-2745.14Lipoyl synthase OS=Rhodospirillum rubrum (strain A... [more]
LIPA_NEOSM1.424e-2746.15Lipoyl synthase OS=Neorickettsia sennetsu (strain ... [more]
LIPA_PSEAE1.860e-2744.44Lipoyl synthase OS=Pseudomonas aeruginosa GN=lipA ... [more]
LIPA_PSEAB1.860e-2744.44Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PSEA81.860e-2744.44Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_PARD81.860e-2743.36Lipoyl synthase OS=Parabacteroides distasonis (str... [more]
LIPA_BACFN2.429e-2741.38Lipoyl synthase OS=Bacteroides fragilis (strain AT... [more]
LIPA_PSEU53.173e-2743.75Lipoyl synthase OS=Pseudomonas stutzeri (strain A1... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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