CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEE4 (Lipoyl synthase OS=Pseudomonas entomophila (strain L48) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 63/144 (43.75%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A++  +VF HN+ETV  L  A R   +++  SLD+L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  148 VITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQTPPDVFNHNLETVPRLYKAARP-GSDYDWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDEEVIEVMHRMREHDIDMLTLGQYLQPSRNHL 289          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_CALS8 (Lipoyl synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 60/142 (42.25%), Postives = 91/142 (64.08%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            V+TSV RDDL D G+ HFA  + K+KEL P   +E L+PDF G+   + +V  +  +V +HN+ETV  L   VR  +A++++SL VL +AK  +     TK+ +M+G GET ++V   +  +R+ G D +T GQY+ PSK+H
Sbjct:  100 VVTSVTRDDLEDGGAEHFANVIEKIKELNPQTKVEVLIPDFNGDEKAIYKVVSARPDVLSHNVETVPRLYPTVRS-KADYERSLSVLKVAKK-MDNRIYTKSGLMVGLGETKEEVKEVLKNLRSVGCDFVTIGQYLSPSKQH 239          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_BACFR (Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 3
Query:   15 ARGVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +  VITSVDRDDL D G+ H+AQT+R++K L P    E L+PDF+G    + +V K+   + +HN+ETV+ +   VR   AN+  SL+V+   +    +G   K+ IM+G GETP +V   MD + + G  ++T GQY++P+ +H
Sbjct:  100 SHAVITSVDRDDLPDLGAAHWAQTIREIKRLNPETTTEVLIPDFQGRKELIDQVIKACPEIISHNMETVKRISPQVRS-AANYHTSLEVI---RQIAESGITAKSGIMVGLGETPAEVEELMDDLISVGCKILTIGQYLQPTHKH 240          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ACTPJ (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG      E+ K    +VF HN+E V  L   VR   A++K SL++L + K   P    TK+ +M+G GET ++++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  141 VITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGRVEQAVEILKQNPPDVFNHNLENVPRLYREVRP-GADYKWSLELLKIFKQEFP-NIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTIGQYLQPSRHHL 282          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ACTP7 (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG      E+ K    +VF HN+E V  L   VR   A++K SL++L + K   P    TK+ +M+G GET ++++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  141 VITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGRVEQAVEILKQNPPDVFNHNLENVPRLYREVRP-GADYKWSLELLKIFKQEFP-NIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTIGQYLQPSRHHL 282          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ACTP2 (Lipoyl synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG      E+ K    +VF HN+E V  L   VR   A++K SL++L + K   P    TK+ +M+G GET ++++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  141 VITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGRVEQAVEILKQNPPDVFNHNLENVPRLYREVRP-GADYKWSLELLKIFKQEFP-NIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTIGQYLQPSRHHL 282          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPF (Lipoyl synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.144e-27
Identity = 63/144 (43.75%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L PN+ +E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  +P    TK+ +MLG GET D+V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  147 VITSVDRDDLRDGGAQHFADCIREIRKLSPNVQLETLVPDYRGRMDIALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQRFKQMMP-HIPTKSGLMLGLGETDDEVIEVMKRMREHDIDMLTLGQYLQPSRSHL 288          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEFS (Lipoyl synthase OS=Pseudomonas fluorescens (strain SBW25) GN=lipA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.144e-27
Identity = 62/144 (43.06%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L PN+++E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  +P    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  149 VITSVDRDDLRDGGAQHFADCIREIRKLSPNVMLETLVPDYRGRMDVALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQKFKQMMP-HIPTKSGLMLGLGETDEEVIEVMKRMREHDIDMLTLGQYLQPSRSHL 290          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPW (Lipoyl synthase OS=Pseudomonas putida (strain W619) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27
Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A+   +VF HN+ETV  L  A R   +++  SLD+L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  148 VITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQEPPDVFNHNLETVPRLYKAARP-GSDYDWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDEEVIEVMHRMREHDIDMLTLGQYLQPSRSHL 289          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEPK (Lipoyl synthase OS=Pseudomonas putida (strain KT2440) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27
Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A+   +VF HN+ETV  L  A R   +++  SLD+L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  148 VITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQEPPDVFNHNLETVPRLYKAARP-GSDYDWSLDLLQKFKQLVP-HVPTKSGLMLGLGETDEEVIEVMHRMREHDIDMLTLGQYLQPSRSHL 289          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEE43.173e-2743.75Lipoyl synthase OS=Pseudomonas entomophila (strain... [more]
LIPA_CALS83.173e-2742.25Lipoyl synthase OS=Caldicellulosiruptor saccharoly... [more]
LIPA_BACFR3.173e-2740.69Lipoyl synthase OS=Bacteroides fragilis GN=lipA PE... [more]
LIPA_ACTPJ3.173e-2745.83Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_ACTP73.173e-2745.83Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_ACTP23.173e-2745.83Lipoyl synthase OS=Actinobacillus pleuropneumoniae... [more]
LIPA_PSEPF4.144e-2743.75Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_PSEFS4.144e-2743.06Lipoyl synthase OS=Pseudomonas fluorescens (strain... [more]
LIPA_PSEPW5.412e-2743.75Lipoyl synthase OS=Pseudomonas putida (strain W619... [more]
LIPA_PSEPK5.412e-2743.75Lipoyl synthase OS=Pseudomonas putida (strain KT24... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
back to top