CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEP1 (Lipoyl synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27
Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A+   +VF HN+ETV  L  A R   +++  SLD+L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  148 VITSVDRDDLRDGGAQHFADCIREIRALSPGVQLETLVPDYRGRMDVALEITAQEPPDVFNHNLETVPRLYKAARP-GSDYDWSLDLLQKFKQLVP-HVPTKSGLMLGLGETDEEVIEVMHRMREHDIDMLTLGQYLQPSRSHL 289          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEA7 (Lipoyl synthase OS=Pseudomonas aeruginosa (strain PA7) GN=lipA PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27
Identity = 63/144 (43.75%), Postives = 94/144 (65.28%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R++++L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  + R   ++F+ SLD+L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  138 VITSVDRDDLRDGGAQHFADCLREIRKLSPGIQLETLVPDYRGRMDIALEITANEPPDVFNHNLETVPRLYRSSRP-GSDFEWSLDLLQKFKQMVP-HVPTKSGLMLGLGETDEEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 279          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCPA (Lipoyl synthase OS=Mycobacterium paratuberculosis GN=lipA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A+TVR +KEL P+  +E L+PDF G    + EV  S   V AHN+ETV  +   +R     +++SLDVL  A++   AG +TK++++LG GETPD+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGRPDRLAEVFGSRPEVLAHNVETVPRIFKRIRP-AFTYRRSLDVLTAARE---AGLVTKSNLILGLGETPDEVRTALADLRGAGCDIITITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCA1 (Lipoyl synthase OS=Mycobacterium avium (strain 104) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A+TVR +KEL P+  +E L+PDF G    + EV  S   V AHN+ETV  +   +R     +++SLDVL  A++   AG +TK++++LG GETPD+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAETVRAIKELNPSTGVELLIPDFNGRPDRLAEVFGSRPEVLAHNVETVPRIFKRIRP-AFTYRRSLDVLTAARE---AGLVTKSNLILGLGETPDEVRTALADLRGAGCDIITITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_GRAFK (Lipoyl synthase OS=Gramella forsetii (strain KT0803) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 63/143 (44.06%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            V+TSVDRDDL D GS  +A+TV+ ++ + P   +E L+PDF+GN   +  + +    V +HN+ETV+ L   VR  +A + +SL VL   KD       TK+ IMLG GE  ++V+ T+  +R AGVDV+T GQY++PSK+H+
Sbjct:  111 VVTSVDRDDLKDMGSIVWAETVKAIRRMNPETTLETLIPDFQGNERNIDRIIEVAPEVVSHNMETVKRLTREVR-IQAKYDRSLAVLKYLKD--NGIRRTKSGIMLGLGEQEEEVIQTLKDLREAGVDVVTIGQYLQPSKKHL 250          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_AZOVD (Lipoyl synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=lipA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P   +E LVPD+RG      ++ A    +VF HN+ETV  L  A R   A+F+ SLD+L   K  VPA   TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  136 VITSVDRDDLRDGGAQHFADCLREIRRLSPGTQLETLVPDYRGRMEIALDITAAEPPDVFNHNLETVPRLYKASRP-GADFEWSLDLLEAFKKRVPA-VPTKSGLMLGLGETDEEVIEVMKRMREHEIDMLTLGQYLQPSRNHL 277          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ANAMM (Lipoyl synthase OS=Anaplasma marginale (strain St. Maries) GN=lipA PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 63/143 (44.06%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA+ VR++++   ++ +E L PDF G    +  +A +  +V+ HN+ETV  L S VR  RA +  SL++L   KD  P G  TK+  MLG GE+ ++V   MD +R AGVD +  GQY++P+K ++
Sbjct:   98 VITSVDRDDLPDGGASHFAKCVREIRKRDSSVTVEILTPDFLGKPCAIDIIASARPDVYNHNLETVPRLYSRVRP-RAKYFNSLNLLKEVKDKSP-GVFTKSGFMLGLGESKEEVYQVMDDLRCAGVDFIVMGQYLQPTKNNI 238          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_HAEDU (Lipoyl synthase OS=Haemophilus ducreyi GN=lipA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.232e-27
Identity = 64/144 (44.44%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDLAD+G+ HFA TVR++K L P   +E LVPDFRG     V  + ++  +VF HN+E V  L   +R   A++K SL++L + K   P    TK+ +M+G GET +++++ M  +R  GV ++T GQY++PS+ H+
Sbjct:  141 VITSVDRDDLADRGAAHFAATVREIKALNPECKVEILVPDFRGRVEQAVAILKQNPPDVFNHNLENVPRLYREIRP-GADYKWSLELLKIFKQEFP-NIPTKSGLMVGLGETNEEILAVMQDLRDHGVTMLTVGQYLQPSRHHL 282          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ALCBS (Lipoyl synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.206e-26
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRG-NNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSVDRDDLAD G+ HFA+ +R+++ L P   IE L PDFR   +  V  +A++  +VF HNIETV EL   +R   A ++ SLD+L   K   P    TK+ IM+G GET +QV++T+  +R   VD++T GQY++PSK H
Sbjct:  132 VITSVDRDDLADGGAEHFAECIRQVRALTPETRIEILTPDFRPCLDTAVEILAETAPDVFNHNIETVPELYKHIRP-GARYQHSLDLLKRYKALRP-DVSTKSGIMVGLGETFEQVINTIKDLRTHDVDMITIGQYLQPSKHH 272          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBSL (Lipoyl synthase OS=Vibrio splendidus (strain LGP32) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++E  PN+ IE LVPDFRG      E+ K    +VF HN+ET   L    R   AN+K SLD+L   K+  P    TK+ +M+G GET +++V  +  +R  GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIREQNPNIRIETLVPDFRGRMDVALELMKDNPPDVFNHNLETAPRLYRKARP-GANYKWSLDLLRKFKEQHP-NIPTKSGVMMGLGETKEEIVQVLKDLREHGVTMLTLGQYLAPSRHHL 273          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_PSEP15.412e-2743.75Lipoyl synthase OS=Pseudomonas putida (strain F1 /... [more]
LIPA_PSEA75.412e-2743.75Lipoyl synthase OS=Pseudomonas aeruginosa (strain ... [more]
LIPA_MYCPA7.069e-2744.68Lipoyl synthase OS=Mycobacterium paratuberculosis ... [more]
LIPA_MYCA17.069e-2744.68Lipoyl synthase OS=Mycobacterium avium (strain 104... [more]
LIPA_GRAFK7.069e-2744.06Lipoyl synthase OS=Gramella forsetii (strain KT080... [more]
LIPA_AZOVD7.069e-2745.14Lipoyl synthase OS=Azotobacter vinelandii (strain ... [more]
LIPA_ANAMM7.069e-2744.06Lipoyl synthase OS=Anaplasma marginale (strain St.... [more]
LIPA_HAEDU9.232e-2744.44Lipoyl synthase OS=Haemophilus ducreyi GN=lipA PE=... [more]
LIPA_ALCBS1.206e-2647.55Lipoyl synthase OS=Alcanivorax borkumensis (strain... [more]
LIPA_VIBSL1.575e-2645.14Lipoyl synthase OS=Vibrio splendidus (strain LGP32... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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