CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ORITI (Lipoyl synthase OS=Orientia tsutsugamushi (strain Ikeda) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDD++D G+ HFA+ +  ++E  P+  IE L PDF   +   + VAK+  +V+ HNIETV  L   VR   A +  SL++L   K +  +   TK+ IM+G GET  +V+  MD +RAA VD +T GQY+RPS RH+
Sbjct:  108 VITSVDRDDISDGGASHFAKCITYIRERSPSTSIEVLTPDFLRKHDAWKIVAKARPDVYNHNIETVPSLYLKVRP-GARYYNSLNLLHQVKIF-DSSIFTKSGIMVGLGETKHEVLQVMDDLRAAEVDFLTIGQYLRPSARHI 248          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ORITB (Lipoyl synthase OS=Orientia tsutsugamushi (strain Boryong) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 66/143 (46.15%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL+D G+ HFA+ +  ++E  P   IE L PDF   +   + VAK+  +V+ HNIETV  L   VR   A +  SL++L   K +  +   TK+ IM+G GET  +V+  MD +RAA VD +T GQY+RPS RH+
Sbjct:  108 VITSVDRDDLSDGGASHFAKCITYIRERSPTTSIEVLTPDFLRKHEAWKIVAKARPDVYNHNIETVPSLYLKVRP-GARYYNSLNLLHQVKIF-DSSIFTKSGIMVGLGETKHEVLQVMDDLRAAEVDFLTIGQYLRPSARHI 248          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MAGSM (Lipoyl synthase OS=Magnetococcus sp. (strain MC-1) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 3
Query:    3 RAESARGVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            R E    VITSVDRDDL D G+G F   ++ L+ + P   +E L PDFR   G +  +  +  +VF HN+ETV  L + VR   +++  SL+VL  AK   P G +TK+ IMLG GE   +V++    +RAAGVD +T GQY+RPS  H
Sbjct:  102 RMELKHVVITSVDRDDLEDGGAGQFIACIQALRRVLPEASVEVLTPDFRHKQGALERLVAARPDVFNHNVETVPRLYANVRP-VSSYAFSLEVLRRAKQLNPEG-MTKSGIMLGLGEDEAEVLAVFADLRAAGVDYLTVGQYLRPSPAH 248          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_EHRCR (Lipoyl synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 60/142 (42.25%), Postives = 91/142 (64.08%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSVDRDDL D GSGHF + + ++++   N+ IE L PDF   +G + +VA +  +V+ HNIETV  L + +R  +A +  SL +L   K Y      TK+ IM+G GET +++   M+ +R+A VD +T GQY++P+ +H
Sbjct:   98 VITSVDRDDLEDGGSGHFVECIEEIRKNDQNVTIEVLTPDFLNKHGAIEKVADAAPDVYNHNIETVPRLYAKIRP-KARYFHSLYLLKTVK-YKNPKVFTKSGIMVGLGETKEEIYQVMNDLRSADVDFITIGQYLQPTPKH 237          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_BEII9 (Lipoyl synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=lipA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.575e-26
Identity = 63/142 (44.37%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSVDRDDLAD G+ HFAQ +R ++E  P   IE L PDF   +G +  V  +  +VF HN+ETV     +VR   A +  S+ +L   K+  P    TK+ IM+G GET ++V+  MD +R A VD +T GQY++P+++H
Sbjct:  130 VITSVDRDDLADGGAEHFAQVIRAIREASPKTTIEVLTPDFLRKDGALEIVVAARPDVFNHNLETVPAKYLSVRP-GARYFHSIRLLQRVKELDPT-IFTKSGIMVGLGETRNEVLQLMDDLRTADVDFLTIGQYLQPTRKH 269          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBHB (Lipoyl synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++EL P++ IE LVPDFRG      ++ K    +VF HN+ET   L    R   AN+K SL +L   K+  P    TK+ +M+G GET +++V  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAEHFANCNREIRELNPHIKIETLVPDFRGRMDVALDLMKDNPPDVFNHNLETAPRLYRKARP-GANYKWSLQLLQKFKEQHP-NVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCTU (Lipoyl synthase OS=Mycobacterium tuberculosis GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G    + EV +SG  V AHN+ETV  +   +R     +++SL VL  A+D   AG +TK++++LG GET D+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRP-AFTYRRSLGVLTAARD---AGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCTA (Lipoyl synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G    + EV +SG  V AHN+ETV  +   +R     +++SL VL  A+D   AG +TK++++LG GET D+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRP-AFTYRRSLGVLTAARD---AGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCBT (Lipoyl synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G    + EV +SG  V AHN+ETV  +   +R     +++SL VL  A+D   AG +TK++++LG GET D+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRP-AFTYRRSLGVLTAARD---AGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCBP (Lipoyl synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G    + EV +SG  V AHN+ETV  +   +R     +++SL VL  A+D   AG +TK++++LG GET D+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRP-AFTYRRSLGVLTAARD---AGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH 256          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_ORITI1.575e-2645.45Lipoyl synthase OS=Orientia tsutsugamushi (strain ... [more]
LIPA_ORITB1.575e-2646.15Lipoyl synthase OS=Orientia tsutsugamushi (strain ... [more]
LIPA_MAGSM1.575e-2644.30Lipoyl synthase OS=Magnetococcus sp. (strain MC-1)... [more]
LIPA_EHRCR1.575e-2642.25Lipoyl synthase OS=Ehrlichia chaffeensis (strain A... [more]
LIPA_BEII91.575e-2644.37Lipoyl synthase OS=Beijerinckia indica subsp. indi... [more]
LIPA_VIBHB2.686e-2644.44Lipoyl synthase OS=Vibrio harveyi (strain ATCC BAA... [more]
LIPA_MYCTU2.686e-2644.68Lipoyl synthase OS=Mycobacterium tuberculosis GN=l... [more]
LIPA_MYCTA2.686e-2644.68Lipoyl synthase OS=Mycobacterium tuberculosis (str... [more]
LIPA_MYCBT2.686e-2644.68Lipoyl synthase OS=Mycobacterium bovis (strain BCG... [more]
LIPA_MYCBP2.686e-2644.68Lipoyl synthase OS=Mycobacterium bovis (strain BCG... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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