CX291764

Overview
NameCX291764
Unique NameCX291764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_MYCBO (Lipoyl synthase OS=Mycobacterium bovis GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   27 ITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            +T V RDDL D G+  +A TVR +KEL P+  +E L+PDF G    + EV +SG  V AHN+ETV  +   +R     +++SL VL  A+D   AG +TK++++LG GET D+V + +  +R AG D++T  QY+RPS RH
Sbjct:  120 VTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRP-AFTYRRSLGVLTAARD---AGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH 256          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_ALISL (Lipoyl synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++EL P + IE LVPDFRG      +   S   +VF HN+ET   L   VR   AN++ SLD+L   K+  P    TK+ +M+G GET +++V  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIRELNPEIRIETLVPDFRGRMDRALDAMHSNPPDVFNHNLETAPRLYRKVRP-GANYQWSLDLLKKFKEQHPT-VPTKSGVMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBPA (Lipoyl synthase OS=Vibrio parahaemolyticus GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++EL P++ IE LVPDFRG      ++ K    +VF HN+ET   L    R   AN+K SL++L   K+  P    TK+ +M+G GET ++++  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIRELNPDIKIETLVPDFRGRMDVALDLMKDNPPDVFNHNLETAPRLYRKARP-GANYKWSLELLKKFKEQHP-DVPTKSGLMMGLGETKEEIIEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBCM (Lipoyl synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++ L P++ IE LVPDFRG      E  K    +VF HN+ET   L   VR   AN+K SL++L   K+  P    TK+ +M+G GET +++V  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRP-GANYKWSLELLRQFKEQHP-HVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBCH (Lipoyl synthase OS=Vibrio cholerae GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++ L P++ IE LVPDFRG      E  K    +VF HN+ET   L   VR   AN+K SL++L   K+  P    TK+ +M+G GET +++V  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRP-GANYKWSLELLRQFKEQHP-HVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_VIBC3 (Lipoyl synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSG-LNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA   R+++ L P++ IE LVPDFRG      E  K    +VF HN+ET   L   VR   AN+K SL++L   K+  P    TK+ +M+G GET +++V  +  +RA GV ++T GQY+ PS+ H+
Sbjct:  132 VITSVDRDDLRDGGAQHFADCNREIRALNPHIKIETLVPDFRGRMEVALEALKDNPPDVFNHNLETAPRLYRKVRP-GANYKWSLELLRQFKEQHP-HVPTKSGLMMGLGETKEEIVEVLKDLRAHGVTMLTLGQYLAPSRHHL 273          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_RICTY (Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 63/142 (44.37%), Postives = 85/142 (59.86%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRH 449
            VITSVDRDDL D G+ HFA+ + +++   PN  IE L PDF    G V  +A S  +VF HN+ETV  L   +R   A +  SL +L   K   P    TK+ +M+G GE  ++VV  MD +R A VD +T GQY++P+K H
Sbjct:  101 VITSVDRDDLEDGGASHFAECINEIRRSSPNTTIEILTPDFLRKAGAVEVIANSKPDVFNHNVETVPSLYKTIRP-GARYYNSLSLLHNIKKLSPE-IFTKSGMMVGLGEEINEVVQVMDDLREANVDFLTIGQYLQPTKSH 240          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSEU2 (Lipoyl synthase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  145 VITSVDRDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGRMDVALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQRFKQMVP-HVPTKSGLMLGLGETDEEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 286          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_PSE14 (Lipoyl synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREV-AKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D G+ HFA  +R+++ L P + +E LVPD+RG      E+ A    +VF HN+ETV  L  A R   ++++ SL +L   K  VP    TK+ +MLG GET ++V+  M ++R   +D++T GQY++PS+ H+
Sbjct:  145 VITSVDRDDLRDGGAQHFADCIREIRLLSPGVQLETLVPDYRGRMDVALEITAAEPPDVFNHNLETVPRLYKAARP-GSDYQWSLTLLQRFKQMVP-HVPTKSGLMLGLGETDEEVIEVMQRMREHDIDMLTLGQYLQPSRNHL 286          
BLAST of CX291764 vs. ExPASy Swiss-Prot
Match: LIPA_HAEIN (Lipoyl synthase OS=Haemophilus influenzae GN=lipA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 61/144 (42.36%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   24 VITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGN-NGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTKTSIMLGCGETPDQVVSTMDKVRAAGVDVMTFGQYMRPSKRHM 452
            VITSVDRDDL D+G+GHF++ V+ ++EL PN+ IE LVPDFRG     + ++  +  +VF HN+E V  L   +R   A+++ SL +L   K+  P    TK+ +M+G GET ++++  M  +R  GV ++T GQY++PS+ H+
Sbjct:  131 VITSVDRDDLPDRGAGHFSECVKAVRELNPNIKIEILVPDFRGRITQALEKLKDNPPDVFNHNLENVPRLYKEIRP-GADYEWSLKLLREFKEIFP-NIPTKSGLMVGLGETNEEILQVMQDLRDNGVTMLTLGQYLQPSRHHL 272          
The following BLAST results are available for this feature:
BLAST of CX291764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIPA_MYCBO2.686e-2644.68Lipoyl synthase OS=Mycobacterium bovis GN=lipA PE=... [more]
LIPA_ALISL2.686e-2645.14Lipoyl synthase OS=Aliivibrio salmonicida (strain ... [more]
LIPA_VIBPA3.508e-2643.75Lipoyl synthase OS=Vibrio parahaemolyticus GN=lipA... [more]
LIPA_VIBCM3.508e-2645.14Lipoyl synthase OS=Vibrio cholerae serotype O1 (st... [more]
LIPA_VIBCH3.508e-2645.14Lipoyl synthase OS=Vibrio cholerae GN=lipA PE=3 SV... [more]
LIPA_VIBC33.508e-2645.14Lipoyl synthase OS=Vibrio cholerae serotype O1 (st... [more]
LIPA_RICTY3.508e-2644.37Lipoyl synthase OS=Rickettsia typhi GN=lipA PE=3 S... [more]
LIPA_PSEU23.508e-2643.06Lipoyl synthase OS=Pseudomonas syringae pv. syring... [more]
LIPA_PSE143.508e-2643.06Lipoyl synthase OS=Pseudomonas syringae pv. phaseo... [more]
LIPA_HAEIN3.508e-2642.36Lipoyl synthase OS=Haemophilus influenzae GN=lipA ... [more]

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Properties
Property NameValue
Genbank descriptionC04004E02SK FlavFr1 Citrus clementina cDNA clone C04004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291764 ID=CX291764; Name=CX291764; organism=Citrus clementina; type=EST; length=453bp
CTCGTGCCGAATCGGCACGAGGGGTGATTACTAGTGTTGATAGAGATGAT
TTAGCTGATCAGGGAAGTGGGCATTTTGCTCAGACGGTGCGGAAGTTGAA
AGAATTGAAGCCGAATATGCTTATTGAAGCATTGGTTCCTGATTTTCGCG
GAAACAACGGCTGTGTGCGGGAAGTTGCCAAGTCAGGGTTGAATGTCTTT
GCTCATAATATTGAGACGGTTGAAGAGCTTCAAAGTGCTGTGAGGGATCA
CCGTGCTAATTTTAAGCAATCCTTGGACGTTCTAATGATGGCCAAAGACT
ATGTTCCTGCTGGAACACTCACCAAGACCTCAATAATGTTGGGTTGTGGG
GAAACACCTGATCAAGTTGTGAGTACAATGGACAAGGTGAGAGCAGCAGG
TGTTGATGTAATGACATTTGGTCAATATATGAGGCCATCAAAGCGACATA
TGC
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