CX291772

Overview
NameCX291772
Unique NameCX291772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291772 vs. ExPASy Swiss-Prot
Match: 1A1L1_TAKRU (1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Takifugu rubripes GN=accs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = 2
Query:    8 KDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVD-NFLVETSKRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCIANMDDDTLQVALNRIAAFVQQDKE 493
            KD  + G RVG +YS +  +V    K+ +F  +   TQ  +A +L D E++D  +L     RL       T  L  + +  L  +A +F W DLR  L E + E E+ LWR  +   K+ +S G +F C+ PGWFR+  ++  D  L++ + RI   +++ K+
Sbjct:  340 KDFAMAGIRVGTLYSESRDLVEAVAKLGAFHGIPGTTQRQVAQLLQDREWIDTQYLPRNRSRLKAARSYVTGELRGLDVPYLDRSAAMFVWADLRKFLAEPSFEEEMRLWRHFLKH-KVVLSCGQAFSCSTPGWFRIVFSD-QDRRLKLGMKRIKEALEEYKD 500          
BLAST of CX291772 vs. ExPASy Swiss-Prot
Match: 1A1L2_HUMAN (1-aminocyclopropane-1-carboxylate synthase-like protein 2 OS=Homo sapiens GN=ACCSL PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 53/166 (31.93%), Postives = 88/166 (53.01%), Query Frame = 2
Query:    2 TRKDMGLPGFRVGIVYSFNDTVVNCGRKMSSFGLVSSQTQYLLASMLSDDEFVDNFLVETS-KRLAKRHHNFTKGLEQVGINCLKSNAGLFFWMDLRHLLKEKTLEGEIALWRTIVNDVKLNVSPGSSFQCTEPGWFRVCIANMDDDTLQVALNRIAAFVQQDKES 496
            T KD G+ GFR G +Y+ N  V +          +S  TQ+ L  +L + E++D   + T+  RL + H   T  L+ + I     ++GL+ W++L+  L   T E E  L+   + D KL +S G ++ C EPGWFR+  A+ +   L++A+ R    +Q+ KE+
Sbjct:  393 TSKDFGISGFRFGALYTHNKEVASAVSAFGYLHSISGITQHKLCQLLQNTEWIDKVYLPTNCYRLREAHKYITAELKALEIPFHNRSSGLYVWINLKKYLDPCTFEEERLLYCRFL-DNKLLLSRGKTYMCKEPGWFRLIFAD-ELPRLKLAMRRFCDVLQEQKEA 556          
The following BLAST results are available for this feature:
BLAST of CX291772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
1A1L1_TAKRU1.314e-1731.901-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A1L2_HUMAN6.519e-1731.931-aminocyclopropane-1-carboxylate synthase-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC04004F05SK FlavFr1 Citrus clementina cDNA clone C04004F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291772 ID=CX291772; Name=CX291772; organism=Citrus clementina; type=EST; length=556bp
CACGAGGAAGGACATGGGGCTCCCTGGCTTTAGAGTTGGCATTGTGTACT
CGTTTAATGATACTGTTGTGAATTGCGGCCGCAAGATGTCGAGCTTCGGT
TTAGTCTCTTCGCAGACTCAGTACTTGCTTGCTTCAATGCTCTCTGATGA
TGAGTTTGTCGATAACTTTCTCGTGGAGACCTCCAAGAGGTTAGCTAAGA
GACACCATAATTTCACCAAGGGACTTGAACAAGTTGGAATCAACTGCTTG
AAAAGCAATGCGGGTCTTTTTTTTTGGATGGACTTGCGTCATCTGCTTAA
GGAAAAAACATTAGAAGGTGAAATTGCTCTGTGGCGCACCATTGTCAACG
ATGTGAAGCTCAATGTTTCGCCTGGCTCTTCGTTTCAGTGTACTGAGCCT
GGTTGGTTTAGGGTTTGCATTGCTAACATGGATGATGACACATTGCAAGT
TGCACTAAACCGAATTGCCGCATTTGTGCAACAGGATAAGGAAAGCGAGA
AACCAACCAAGAAACGTTGGCAGCAGAATCTTCGCGTCAGCTTCTCATCG
AGGATC
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