CX291777

Overview
NameCX291777
Unique NameCX291777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.675e-45
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPL 564
            EKIH++AP IYCCGAG AAD E  T MV+S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD TGP L+ ++PHGS   LPF  +GSG  AA+A+ E +++  +T +    L+V+A+ +GI  DLGSG NVD CVITK   + LR    P      + + +  P  T VL   + PL
Sbjct:   71 EKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPL 258          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.563e-45
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKG-YSF-PKKTEVLLTKITPL 564
            EKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+LV+GGVD  GP L+ ++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI +DLGSG NVD CVIT G  +  R   L  P   V   G Y F P  T VL  ++ PL
Sbjct:   71 EKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQR--ALSTPTEPVQRAGRYRFAPGTTPVLTREVRPL 258          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.784e-45
Identity = 91/189 (48.15%), Postives = 122/189 (64.55%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSF-PKKTEVLLTKITPL 564
            EKIH++AP IYCCGAG AAD E  T M +S ++LH   TGRE RV T   +L++ LF YQGYV A+L++GGVD TGP L++++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI  DLGSG NVD CVIT    + LR    P  +    +  Y F P  T VL   + PL
Sbjct:   71 EKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGNVDACVITAAGAKMLRALSSPT-KPIERSSQYRFAPGTTPVLSQTVVPL 258          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.286e-43
Identity = 79/150 (52.67%), Postives = 109/150 (72.67%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG 450
            EKIH++AP IYCCGAG AADTE  T M +S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD  GP L++++PHGS   LPF  +GSG  AA+A+ E +++  +T +   +L+V+AI +GI  DLGSG +VD CVIT G
Sbjct:   71 EKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGGSVDACVITAG 220          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB7_ENCCU (Probable proteasome subunit beta type-7 OS=Encephalitozoon cuniculi GN=PUP1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.927e-33
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNH 474
            KIH +   I CCGAGTAAD   V  M S +L+L +    R   V     +  +HL  Y G + AAL++GG+D  G HL+ I+PHGS ++  F ++GSGSL A+A  ES+Y+  + KDE I L  DA+ +GI NDL SGSN+DVCVI     E+LRN+
Sbjct:   39 KIHQITDKIMCCGAGTAADASRVARMASRELRLFQNKYLRLPLVSHFRKVCTQHLHKYGGGIGAALIVGGIDSEGCHLYEIHPHGSENSALFVSLGSGSLGAIATLESRYR-AMDKDEAIDLACDAVKAGILNDLYSGSNIDVCVIDYSGVEFLRNY 194          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.530e-16
Identity = 52/153 (33.99%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDC-TGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459
            KI  +   IYCC +G+AADT+A++D V   L++H      E  V TA +L +   ++ +  + A +++ G D   G  ++ I   GS    PFA  GSGS       +SK+K  +TKDE I+ V +++   +F D  SG  + +C+I K   E
Sbjct:   47 KITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDECIEFVQNSLALAMFRDGSSGGVIRLCIIDKNGVE 199          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.609e-16
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447
            +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  A  L +   +N +  +Q  +++GG D   G  ++ I P G+    PFA  GSGS      F+  +KEG+T++E  +LVV A+   I  D  SG  V    I K
Sbjct:   45 DKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLVVTAVSLAIARDGASGGVVRTVTINK 194          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.408e-16
Identity = 44/154 (28.57%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459
            +K+  +  NI+CC +G+AADT+ V D++   L ++R   G +  V TA TL  +  +  +  + A L++ G D  TG  +++I   GS    P A  GSGS       ++ ++E +T++E ++ + +A+   +  D  SG  + + ++ K   E
Sbjct:   56 DKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKDGME 209          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.691e-15
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVI 441
            +KI  +  N+Y C +G+AAD++ V+D V   L  H    G+ + V  +  L++   +N +  +Q  L++GG D   G  ++ I   G+    PFA  GSGS      F+  +K+ +TK+E  QLVV A+   I  D  SG  V   +I
Sbjct:   44 DKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLVVKAVSLAIARDGASGGVVRTVII 191          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 46/150 (30.67%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447
            +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G     PFA  GSGS       ++ Y+EG+TK+E +Q   +A+   +  D  SG  + +  I +
Sbjct:   66 DKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQPFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAE 215          
The following BLAST results are available for this feature:
BLAST of CX291777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PSB10_HUMAN2.675e-4547.34Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSB10_MOUSE4.563e-4549.47Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN7.784e-4548.15Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB10_RAT7.286e-4352.67Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB7_ENCCU8.927e-3347.13Probable proteasome subunit beta type-7 OS=Encepha... [more]
PSB6_DICDI1.530e-1633.99Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_TOBAC2.609e-1634.00Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_SCHPO3.408e-1628.57Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_ARATH1.691e-1533.11Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_BOVIN6.427e-1530.67Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]

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Properties
Property NameValue
Genbank descriptionC04004G03SK FlavFr1 Citrus clementina cDNA clone C04004G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291777 ID=CX291777; Name=CX291777; organism=Citrus clementina; type=EST; length=568bp
GAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAAC
TGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGT
TACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACT
CTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTT
GGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATC
CACATGGTTCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCT
CTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCTGACTAA
AGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTATATTCA
ATGACTTGGGAAGTGGAAGCAATGTTGATGTCTGTGTAATTACCAAGGGG
CACAAAGAGTACCTGAGGAACCACCTTTTGCCAAATCCTCGCACCTTTGT
CAATGCCAAAGGCTATTCTTTCCCTAAGAAGACAGAGGTCCTCTTGACGA
AGATCACCCCGCTGAGGG
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