CX291777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14 Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1 Query: 1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459 +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A+ + D SG + + I + E Sbjct: 65 DKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVE 218
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14 Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1 Query: 1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459 +K+ + +I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TKDE +Q +A+ + D SG + + I + E Sbjct: 65 DKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVE 218
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14 Identity = 46/154 (29.87%), Postives = 78/154 (50.65%), Query Frame = 1 Query: 1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459 +K+ + I+CC +G+AADT+AV D V+ QL H V TA +L K+ + Y+ + A +++ G D G ++++ G FA GSGS ++ Y+EG+TK+E +Q +A+ + D SG + + I + E Sbjct: 66 DKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 219
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13 Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 417 K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + + D SG Sbjct: 51 KLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13 Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 417 K+ + IYC +G+AAD + + +MV+ QL +H G + +V +A TL+K + Y+ + A L++ G D G + +G PFA GSGS +++Y++ ++K++ Q VV+ + + D SG Sbjct: 51 KLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13 Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 1 Query: 1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447 +K++ + + AG+ D + + +VS + QL++ ES + +T L + + Y + L++GGVD GP ++++ G S + + GSGS A + E +Y+E +T EG+ L + AI + D SG N+DV VITK Sbjct: 41 KKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITK 191
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13 Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465 K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + +QA + G D GP ++T+ G + PF GSGS ++KYK ++K+E +Q +A+ + D SG + VIT+ E++ Sbjct: 50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHV 204
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12 Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 43 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447 AG D + + + ++L+L+R R + + A+ L ++ N Y+ L++GG+D T PH+ +I G + +A+ GSGS + ES+Y E +T DEG+ LV+ AI + D SG +DV VIT+ Sbjct: 54 AGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITR 188
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12 Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465 K+ + I+CC AG+ AD +AVT Q+ H V A ++LK+ +N + +QA + G D GP ++T+ G + PF GSGS ++KYK ++K+E +Q +A+ + D SG + VIT+ E++ Sbjct: 50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHV 204
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12 Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 1 Query: 1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465 +K+ + I+CC +G+AADT+A+ D+V L+L+ G S TA ++ K+ + + + A +++ G D ++TI GS LP+A GSGS + ++E ++K+E + + ++ I D SG + + V+T E L Sbjct: 51 DKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205 The following BLAST results are available for this feature:
BLAST of CX291777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291777 ID=CX291777; Name=CX291777; organism=Citrus clementina; type=EST; length=568bpback to top |