CX291777

Overview
NameCX291777
Unique NameCX291777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459
            +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   65 DKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQQSGVE 218          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 47/154 (30.52%), Postives = 79/154 (51.30%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459
            +K+  +  +I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TKDE +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   65 DKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAAIQESGVE 218          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 46/154 (29.87%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVD-CTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKE 459
            +K+  +   I+CC +G+AADT+AV D V+ QL  H         V TA +L K+  + Y+  + A +++ G D   G  ++++   G      FA  GSGS       ++ Y+EG+TK+E +Q   +A+   +  D  SG  + +  I +   E
Sbjct:   66 DKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVE 219          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_SALSA (Proteasome subunit beta type-9 OS=Salmo salar GN=psmb9-a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 417
            K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +   +  D  SG
Sbjct:   51 KLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_ONCMY (Proteasome subunit beta type-9 OS=Oncorhynchus mykiss GN=psmb9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 41/138 (29.71%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 417
            K+  +   IYC  +G+AAD + + +MV+ QL +H    G + +V +A TL+K   + Y+  + A L++ G D  G     +  +G     PFA  GSGS       +++Y++ ++K++  Q VV+ +   +  D  SG
Sbjct:   51 KLSLLHDKIYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIVAGWDKRGGGQVYVTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 46/152 (30.26%), Postives = 79/152 (51.97%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGY--VQAALVLGGVDCTGPHLHTIYPHG-STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447
            +K++ +   +    AG+  D + +  +VS + QL++     ES  +  +T L  +  +   Y  +   L++GGVD  GP ++++   G S +    +  GSGS  A  + E +Y+E +T  EG+ L + AI +    D  SG N+DV VITK
Sbjct:   41 KKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRD-ESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITK 191          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465
            K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+   +  D  SG    + VIT+   E++
Sbjct:   50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHV 204          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   43 AGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYV--QAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK 447
            AG   D + +   + ++L+L+R    R +  + A+  L  ++ N   Y+     L++GG+D T PH+ +I   G +    +A+ GSGS     + ES+Y E +T DEG+ LV+ AI +    D  SG  +DV VIT+
Sbjct:   54 AGLVGDAQVLVRYMKAELELYRLQR-RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITR 188          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT-GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465
            K+  +   I+CC AG+ AD +AVT     Q+  H         V  A ++LK+  +N +  +QA  +  G D   GP ++T+   G   + PF   GSGS       ++KYK  ++K+E +Q   +A+   +  D  SG    + VIT+   E++
Sbjct:   50 KLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFITAGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHV 204          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGP-HLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYL 465
            +K+  +   I+CC +G+AADT+A+ D+V   L+L+    G  S   TA ++ K+  +  +  + A +++ G D      ++TI   GS   LP+A  GSGS       +  ++E ++K+E +  +  ++   I  D  SG  + + V+T    E L
Sbjct:   51 DKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPS-TETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205          
The following BLAST results are available for this feature:
BLAST of CX291777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PSB6_RAT1.432e-1430.52Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE1.432e-1430.52Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_HUMAN4.166e-1429.87Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB9_SALSA1.212e-1329.71Proteasome subunit beta type-9 OS=Salmo salar GN=p... [more]
PSB9_ONCMY2.068e-1329.71Proteasome subunit beta type-9 OS=Oncorhynchus myk... [more]
PSMB_METTE3.527e-1330.26Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PB6LB_SALSA7.857e-1329.68Proteasome subunit beta type-6-B like protein OS=S... [more]
PSMB_THEAC1.340e-1232.85Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PB6LA_SALSA1.340e-1229.68Proteasome subunit beta type-6-A like protein OS=S... [more]
PSB6_YEAST1.750e-1228.21Proteasome component PRE3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC04004G03SK FlavFr1 Citrus clementina cDNA clone C04004G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291777 ID=CX291777; Name=CX291777; organism=Citrus clementina; type=EST; length=568bp
GAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAAC
TGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGT
TACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACT
CTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTT
GGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATC
CACATGGTTCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCT
CTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCTGACTAA
AGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTATATTCA
ATGACTTGGGAAGTGGAAGCAATGTTGATGTCTGTGTAATTACCAAGGGG
CACAAAGAGTACCTGAGGAACCACCTTTTGCCAAATCCTCGCACCTTTGT
CAATGCCAAAGGCTATTCTTTCCCTAAGAAGACAGAGGTCCTCTTGACGA
AGATCACCCCGCTGAGGG
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