CX291777

Overview
NameCX291777
Unique NameCX291777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQ--AALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITK-GHKE 459
            KIH +  ++   GAG   D   +  ++ ++ +L+   +G+   V    TLL  ++ N   Y    A  ++GG D   P L+++   G      +AT GSG   A ++ +S+YK+ LT +EGI+L V AI + I  D+ SG  + V  ITK G+KE
Sbjct:   43 KIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLA-NIMNGAKYFPYLAWFLVGGYD-EKPKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKE 195          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_ORYLA (Proteasome subunit beta type-9 OS=Oryzias latipes GN=psmb9 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 41/138 (29.71%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    4 KIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSG 417
            K+  +   IYC  +G+AAD + + +MV+ QL +H      + +V +A TL+K   + Y+  + A L++ G D            G     PFA  GSGS       +++Y+ G+TK+E  + VV+ +   +  D  SG
Sbjct:   51 KLSPLHDKIYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIVAGWDRRDGGQVFATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSG 188          
BLAST of CX291777 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 49/164 (29.88%), Postives = 77/164 (46.95%), Query Frame = 1
Query:    1 EKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCT--GPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKG---HKEYLRNHL 477
            +K+  +   IYC  +G+AAD +AV DM + QL+LH         V+ A  +++   + Y+  + A L++ G D    G    T+   G     PFA  GSGS       ++ YK G++ +E  +   DAI   +  D  SG  + +  IT     H+  L N L
Sbjct:   52 DKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTL--GGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNEL 213          
The following BLAST results are available for this feature:
BLAST of CX291777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
PSMB_PYRHO1.134e-1132.90Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSB9_ORYLA1.935e-1129.71Proteasome subunit beta type-9 OS=Oryzias latipes ... [more]
PSB9_HUMAN7.353e-1129.88Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04004G03SK FlavFr1 Citrus clementina cDNA clone C04004G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291777 ID=CX291777; Name=CX291777; organism=Citrus clementina; type=EST; length=568bp
GAGAAAATTCATTACATGGCTCCAAACATATATTGTTGTGGTGCAGGAAC
TGCTGCTGACACAGAGGCTGTAACTGACATGGTCAGCTCACAGCTGCAGT
TACATCGTTATCATACTGGTAGAGAGTCAAGGGTTGTTACAGCACTGACT
CTTCTCAAGAAGCACCTTTTCAACTACCAAGGTTATGTGCAAGCTGCTTT
GGTTCTTGGTGGAGTTGATTGCACTGGACCTCATCTTCACACAATATATC
CACATGGTTCAACTGACACTTTGCCATTTGCGACAATGGGTTCTGGTTCT
CTTGCTGCCATGGCTATGTTTGAATCAAAATACAAAGAAGGCCTGACTAA
AGATGAGGGAATACAGCTAGTTGTGGACGCCATTTGCTCTGGTATATTCA
ATGACTTGGGAAGTGGAAGCAATGTTGATGTCTGTGTAATTACCAAGGGG
CACAAAGAGTACCTGAGGAACCACCTTTTGCCAAATCCTCGCACCTTTGT
CAATGCCAAAGGCTATTCTTTCCCTAAGAAGACAGAGGTCCTCTTGACGA
AGATCACCCCGCTGAGGG
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