CX291788

Overview
NameCX291788
Unique NameCX291788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_NEMVE (40S ribosomal protein SA OS=Nematostella vectensis GN=v1g198553 PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.810e-67
Identity = 120/178 (67.42%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L  KE D+   LAA VHLG  NCDFQME YV+KR++DG+ IIN+ KTWEKL +AAR+IV IENP D+ V SARPYGQRA+LK+A +T A  IAGR TPGTFTNQ+Q +F EPRLLI+ DPR DHQP+ EA+  NIP IAFC+TDSP+R+VD+ IP NNKG HSIG +FWLLAR VL+M
Sbjct:    8 LQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRM 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_COPC7 (40S ribosomal protein S0 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.348e-66
Identity = 119/185 (64.32%), Postives = 148/185 (80.00%), Query Frame = 3
Query:   75 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            T+  P  LS  E DIQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AAR+I A+ENP DI V SARPYG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++
Sbjct:    2 TSKLPSILSATEEDIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARIIAAVENPNDICVISARPYGHRAVLKFAANTGAQAIAGRFTPGSFTNYITRSFKEPRIIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLQFVDVAIPTNNKTRHSIGLIWWLLAREVLRL 186          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROYA (40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROTE (40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROSI (40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROSE (40S ribosomal protein SA OS=Drosophila sechellia GN=sta PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROME (40S ribosomal protein SA OS=Drosophila melanogaster GN=sta PE=1 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:   51 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 228          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROER (40S ribosomal protein SA OS=Drosophila erecta GN=sta PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.711e-66
Identity = 121/178 (67.98%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_TRIAD (40S ribosomal protein SA OS=Trichoplax adhaerens GN=TRIADDRAFT_49917 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 7.458e-66
Identity = 116/172 (67.44%), Postives = 143/172 (83.14%), Query Frame = 3
Query:  114 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            D+  MLAA  HLGT N D+QME+YVF+RR DG++II+L +TWEKL +AAR+I +IENP D+ V SARPYGQRAVLKFAK+T A  IAGR TPGTFTNQ+Q ++ EPRLLI+TDPR DHQPI EA+  NIP IAFC+TDS +RY+D+GIP NNKG H+IG ++WLLAR VL++
Sbjct:   14 DVSKMLAASAHLGTTNVDYQMEQYVFRRRTDGVHIIDLRQTWEKLLIAARIIASIENPADVCVLSARPYGQRAVLKFAKFTGASPIAGRFTPGTFTNQIQKAYREPRLLIVTDPRVDHQPITEASYVNIPVIAFCNTDSRLRYIDVGIPCNNKGAHAIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.662e-65
Identity = 117/177 (66.10%), Postives = 144/177 (81.36%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 626
            LS KE D+  ML A+ H+G++N D+QME+YV+KRRNDG++I+NL +TWEKL +AAR IVAIE+P D+ V S+RP GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EAA  NIP IAFC+T+SP+R+VDI IP NNK  HSIG ++WLLAR VL+
Sbjct:    8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLR 184          
The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_NEMVE8.810e-6767.4240S ribosomal protein SA OS=Nematostella vectensis... [more]
RSSA_COPC73.348e-6664.3240S ribosomal protein S0 OS=Coprinopsis cinerea (s... [more]
RSSA_DROYA5.711e-6667.9840S ribosomal protein SA OS=Drosophila yakuba GN=s... [more]
RSSA_DROTE5.711e-6667.9840S ribosomal protein SA OS=Drosophila teissieri G... [more]
RSSA_DROSI5.711e-6667.9840S ribosomal protein SA OS=Drosophila simulans GN... [more]
RSSA_DROSE5.711e-6667.9840S ribosomal protein SA OS=Drosophila sechellia G... [more]
RSSA_DROME5.711e-6667.9840S ribosomal protein SA OS=Drosophila melanogaste... [more]
RSSA_DROER5.711e-6667.9840S ribosomal protein SA OS=Drosophila erecta GN=s... [more]
RSSA_TRIAD7.458e-6667.4440S ribosomal protein SA OS=Trichoplax adhaerens G... [more]
RSSA_DIACI1.662e-6566.1040S ribosomal protein SA OS=Diaphorina citri PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC04005A01SK FlavFr1 Citrus clementina cDNA clone C04005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bp
GGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTT
TGAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTC
TCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGG
GTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGA
AACGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACA
GATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTG
TCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAG
TACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTAC
CAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAG
ATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATT
CCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATAT
TGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCT
GGCTTTTGGCTAGAATGGTTCTCCAGATG
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