CX291788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.771e-28 Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 3 Query: 129 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLAR 614 LA+ +H+GT+ M+R++++ R DG+Y++++ KT E++ +AA+ + E P +I+ S R Y + KF + T AGR PGT TN F EP +L L+DPR D Q +KEA IP + CDT+ ++D IP NNKG+ S+ +++L+AR Sbjct: 14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAR 174
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 2.771e-28 Identity = 67/178 (37.64%), Postives = 103/178 (57.87%), Query Frame = 3 Query: 102 QKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVL 623 Q EAD ++ L A VH+GT+ MER++ + R DG+Y++++ T E+++ AA + E P I+ S+R YG+ KFA+ A GR PGT TN + EP ++++TDP D Q +KEA IP IA CD+++ VD+ +P NNKG+ ++ ++WLLA L Sbjct: 73 QSEADLLIPVEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQILAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLTNPDYDGYIEPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETL 249
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.619e-28 Identity = 66/178 (37.08%), Postives = 106/178 (59.55%), Query Frame = 3 Query: 93 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 626 +L++ ++ LAA VH+GT+ D M+ ++++ R+DG+YII++ KT E+++ A+ + E P I V ++R YGQ KFA A + GR PGT TN + EP ++I+TDP D Q I EA +P IA CD ++ VD+ IP NNKG+ ++ +++LL + L+ Sbjct: 9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLR 185
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_ENCCU (40S ribosomal protein S0 OS=Encephalitozoon cuniculi GN=RPS0 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.726e-28 Identity = 65/172 (37.79%), Postives = 104/172 (60.47%), Query Frame = 3 Query: 117 IQMMLAAEVHLGTKNCDFQMERYVFKRR-NDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629 +++++ ++ HLG + + RY++ R D I II++ TWEKL +AAR I++P I V S + +G++ V+KF + A I GR PG+FTN +PR+LI++D D Q I E+ N+PTIAF +TD+ + VDI IP NN+ +I F++L+R++ M Sbjct: 19 VKLLIVSQSHLGGTSTNKSFARYLYGTRPRDRINIIDINATWEKLIIAARAFCGIKHPSSIAVVSTKTFGRKPVVKFCEAVGATPITGRFIPGSFTNSEVKRVYDPRVLIVSDTYADKQAILESQYCNLPTIAFVNTDNSLVGVDIAIPMNNRSPSAIAAGFFILSRLINYM 190
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.053e-27 Identity = 65/169 (38.46%), Postives = 100/169 (59.17%), Query Frame = 3 Query: 120 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 626 Q L + VH+GT ME+++++ R DG+ II++ K E+++ A + + + P ++ SAR YG + V KFA+YT A I GR PGT TN EP +++L+DPR D Q E+ IP +A D D+ + +D+ IP NNKG+ S+ ++WLL R VL+ Sbjct: 24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLLTREVLR 191
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26 Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 3 Query: 117 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 626 I + + A +H+GT++ M+ YV K R DG+ I ++ K E+L++A++++ E P +I+V R + KF++ T A GR+ PGT TN + EP ++++TDP D + +A I +A CDT+ Y+D IPANN+G S+ ++W+LAR L+ Sbjct: 7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWILAREYLR 175
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_AERPE (30S ribosomal protein S2P OS=Aeropyrum pernix GN=rps2p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26 Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 3 Query: 135 AEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQ 626 A V GT+ C M ++V + +G Y ++ K E+L MAA+ + E P I V S R YGQ+ V + AI GR PGTFTN + EP ++++TDPR D Q + EA+ IP +A DTD+ + +D+ IPANN+G+ S+ ++W+L R +L+ Sbjct: 18 AGVIYGTQICTRYMRQFVHRILPEGYYQLDYLKIDERLAMAAKFLSTFE-PEKIAVVSVRIYGQKPVRMMCERVGCKAITGRIIPGTFTNPNLEHYVEPDVVVVTDPRMDRQAVVEASKVGIPVVALVDTDNSIENIDLVIPANNRGRRSLALIYWILTREILR 180
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23 Identity = 56/168 (33.33%), Postives = 98/168 (58.33%), Query Frame = 3 Query: 126 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVL 623 +L+ + +GT+ M ++ K +G+Y+++L T +K++ AA+ I + +EN +IV S R Y + + KF + + + GR PGT TN + EP+L++++DP+ D Q I EA IP I +TD+ +D+ IPANN+G+ ++ ++WLL R +L Sbjct: 14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLLVRQIL 178
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18 Identity = 54/169 (31.95%), Postives = 93/169 (55.03%), Query Frame = 3 Query: 123 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVL 623 ++ + + +GT+ M++++ G Y ++L T +++ AA+ I E+ G ++IV S + + + KFA+ I R PGT TN + EP+LL++ DP+ D Q + EA IP I ++D+ +D+ IPANN+G+ ++ +FWLLAR VL Sbjct: 15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLLAREVL 180 The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bpback to top |