CX291788

Overview
NameCX291788
Unique NameCX291788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROPS (40S ribosomal protein SA OS=Drosophila pseudoobscura pseudoobscura GN=sta PE=3 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.170e-65
Identity = 121/178 (67.98%), Postives = 142/178 (79.78%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROPE (40S ribosomal protein SA OS=Drosophila persimilis GN=sta PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.170e-65
Identity = 121/178 (67.98%), Postives = 142/178 (79.78%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROAN (40S ribosomal protein SA OS=Drosophila ananassae GN=sta PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.701e-65
Identity = 120/178 (67.42%), Postives = 142/178 (79.78%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKLQ+AAR IVAI+N  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLQLAARAIVAIDNASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_LACBS (40S ribosomal protein S0 OS=Laccaria bicolor (strain S238N-H82) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.834e-65
Identity = 116/181 (64.09%), Postives = 146/181 (80.66%), Query Frame = 3
Query:   87 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            P  L+  E +IQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AARVI A+ENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++
Sbjct:    6 PSVLAATEEEIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARVIAAVENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLKFVDVAIPTNNKTRHSIGLIWWLLAREVLRL 186          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROVI (40S ribosomal protein SA OS=Drosophila virilis GN=sta PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.834e-65
Identity = 121/178 (67.98%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROMO (40S ribosomal protein SA OS=Drosophila mojavensis GN=sta PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.834e-65
Identity = 121/178 (67.98%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROGR (40S ribosomal protein SA OS=Drosophila grimshawi GN=sta PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.834e-65
Identity = 121/178 (67.98%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YVFKRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVFKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.077e-64
Identity = 117/178 (65.73%), Postives = 139/178 (78.09%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L+ KE DI   LA   HLG  N DFQME+YV+KR+ DG+YIINL +TWEKL +AAR I AIENP D+ V SARPYGQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIP IA C+TDSP+RYVD+ IP NNK  HS+G ++WLLAR VL++
Sbjct:    8 LALKEEDITKFLACSTHLGATNVDFQMEQYVYKRKPDGVYIINLRRTWEKLLLAARAIAAIENPADVCVISARPYGQRAVLKFASATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.407e-64
Identity = 120/178 (67.42%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_XENLA (40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.399e-64
Identity = 118/178 (66.29%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  + A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQPI EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+M
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASASGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPITEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRM 185          
The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_DROPS2.170e-6567.9840S ribosomal protein SA OS=Drosophila pseudoobscu... [more]
RSSA_DROPE2.170e-6567.9840S ribosomal protein SA OS=Drosophila persimilis ... [more]
RSSA_DROAN3.701e-6567.4240S ribosomal protein SA OS=Drosophila ananassae G... [more]
RSSA_LACBS4.834e-6564.0940S ribosomal protein S0 OS=Laccaria bicolor (stra... [more]
RSSA_DROVI4.834e-6567.9840S ribosomal protein SA OS=Drosophila virilis GN=... [more]
RSSA_DROMO4.834e-6567.9840S ribosomal protein SA OS=Drosophila mojavensis ... [more]
RSSA_DROGR4.834e-6567.9840S ribosomal protein SA OS=Drosophila grimshawi G... [more]
RSSA_PINFU1.077e-6465.7340S ribosomal protein SA OS=Pinctada fucata PE=2 S... [more]
RSSA_DROWI1.407e-6467.4240S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_XENLA2.399e-6466.2940S ribosomal protein SA OS=Xenopus laevis GN=rpsa... [more]

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Properties
Property NameValue
Genbank descriptionC04005A01SK FlavFr1 Citrus clementina cDNA clone C04005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bp
GGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTT
TGAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTC
TCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGG
GTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGA
AACGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACA
GATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTG
TCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAG
TACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTAC
CAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAG
ATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATT
CCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATAT
TGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCT
GGCTTTTGGCTAGAATGGTTCTCCAGATG
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