CX291788

Overview
NameCX291788
Unique NameCX291788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_ANOGA (40S ribosomal protein SA OS=Anopheles gambiae GN=AGAP011777 PE=3 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 1.719e-62
Identity = 112/178 (62.92%), Postives = 143/178 (80.34%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            LS KE D+  MLAA  H+G+ + +FQME+YV+KRR DG++IINLG+T+EKL +AAR I +IE PG++   S+RPYGQRAVLK+A YT A  IAGR TPG FTNQ+QT+F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++W+LAR VL++
Sbjct:    8 LSLKEDDVTKMLAATTHIGSTSVNFQMEQYVYKRRTDGVHIINLGRTYEKLLLAARCIASIEYPGEVFAISSRPYGQRAVLKYAHYTQATPIAGRFTPGAFTNQIQTTFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPVKFVDIAIPCNTKSTHSIGLMWWMLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_AEDAE (40S ribosomal protein SA OS=Aedes aegypti GN=AAEL008083 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.246e-62
Identity = 112/178 (62.92%), Postives = 141/178 (79.21%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L+ K+ D+  MLAA  H+G+ + +FQME YV+KRR DG++IINLG+TWEKL +AAR I +IE PG++   S+RPYGQRAVLKFA YT A   AGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP NNK  HSIG ++WLLAR VL++
Sbjct:    8 LALKDDDVTKMLAATTHVGSTSVNFQMESYVYKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRPYGQRAVLKFAHYTEATPTAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNNKSPHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_MAGGR (40S ribosomal protein S0 OS=Magnaporthe grisea GN=RPS0 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.830e-62
Identity = 110/184 (59.78%), Postives = 141/184 (76.63%), Query Frame = 3
Query:   78 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            A  P   +    DI+M+LAA+ H+G+KN    M  Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++
Sbjct:    4 ANLPSVFNATSQDIEMLLAAQSHIGSKNLQVHMAPYLWKTRQDGVNVINVGKTWEKIVLAARIITAIDNPADVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGCIWWMLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_ORNPR (40S ribosomal protein SA OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.003e-62
Identity = 109/178 (61.24%), Postives = 140/178 (78.65%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L  K+ D++  L A+ H+GT   DFQM++Y FKRR+DG+Y+I+L KTWEKL +AAR IVAIENP ++   S+RPYGQRAVLKFA +T A  IAGR TPGTFTNQ+Q +F EPRLL++ DPR DHQP+ EA+  NIP IAFC+TD+ +RYVD+ IP NNK +HSIG ++W+L R VL+M
Sbjct:    8 LGLKDDDVRRFLTAKTHIGTAQLDFQMQQYCFKRRSDGVYLIDLKKTWEKLLLAARAIVAIENPAEVCAISSRPYGQRAVLKFASFTGATPIAGRFTPGTFTNQIQAAFREPRLLVVCDPREDHQPVTEASYVNIPVIAFCNTDACLRYVDVAIPCNNKAQHSIGLMWWMLTREVLRM 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_AJECG (40S ribosomal protein S0 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62
Identity = 112/181 (61.88%), Postives = 140/181 (77.35%), Query Frame = 3
Query:   87 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I A++NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAVDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFU (40S ribosomal protein S0 OS=Aspergillus fumigatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.456e-61
Identity = 116/186 (62.37%), Postives = 142/186 (76.34%), Query Frame = 3
Query:   84 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFC (40S ribosomal protein S0 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps0 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.456e-61
Identity = 116/186 (62.37%), Postives = 142/186 (76.34%), Query Frame = 3
Query:   84 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDS (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.456e-61
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 3
Query:  114 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++
Sbjct:   16 DIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDR (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.456e-61
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 3
Query:  114 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++
Sbjct:   16 DIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_CULQU (40S ribosomal protein SA OS=Culex quinquefasciatus GN=CPIJ013899 PE=3 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.483e-61
Identity = 111/178 (62.36%), Postives = 140/178 (78.65%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L+ K+ D+  MLAA  H+G+ + +FQME YVFKRR DG++IINLG+TWEKL +AAR I +IE PG++   S+R +GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++WLLAR VL++
Sbjct:    8 LALKDDDVNKMLAATTHVGSTSVNFQMESYVFKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRQFGQRAVLKFAHYTEATPIAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNTKSPHSIGLMWWLLAREVLKL 185          
The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ANOGA1.719e-6262.9240S ribosomal protein SA OS=Anopheles gambiae GN=A... [more]
RSSA_AEDAE2.246e-6262.9240S ribosomal protein SA OS=Aedes aegypti GN=AAEL0... [more]
RSSA_MAGGR3.830e-6259.7840S ribosomal protein S0 OS=Magnaporthe grisea GN=... [more]
RSSA_ORNPR5.003e-6261.2440S ribosomal protein SA OS=Ornithodoros parkeri P... [more]
RSSA_AJECG6.534e-6261.8840S ribosomal protein S0 OS=Ajellomyces capsulata ... [more]
RSSA_ASPFU1.456e-6162.3740S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_ASPFC1.456e-6162.3740S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_AJEDS1.456e-6163.9540S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_AJEDR1.456e-6163.9540S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_CULQU2.483e-6162.3640S ribosomal protein SA OS=Culex quinquefasciatus... [more]

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Properties
Property NameValue
Genbank descriptionC04005A01SK FlavFr1 Citrus clementina cDNA clone C04005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bp
GGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTT
TGAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTC
TCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGG
GTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGA
AACGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACA
GATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTG
TCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAG
TACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTAC
CAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAG
ATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATT
CCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATAT
TGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCT
GGCTTTTGGCTAGAATGGTTCTCCAGATG
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