CX291788

Overview
NameCX291788
Unique NameCX291788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_PLAF7 (40S ribosomal protein SA OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0264 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.682e-60
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 3
Query:   99 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL +
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARIIVAISNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYL 184          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_PLAYO (40S ribosomal protein SA OS=Plasmodium yoelii yoelii GN=PY06059 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 3
Query:   99 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL +
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYL 184          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_PLACH (40S ribosomal protein SA OS=Plasmodium chabaudi GN=PC000391.02.0 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 3
Query:   99 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL +
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYL 184          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_PLABA (40S ribosomal protein SA OS=Plasmodium berghei (strain Anka) GN=PB000415.00.0 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 3
Query:   99 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL +
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYL 184          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_MACHI (40S ribosomal protein SA OS=Maconellicoccus hirsutus PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 3
Query:   96 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            L   E DI  ML+A  HLG +N +FQME+Y++KRR+DGI I NL KTWEKL +AAR I A+E+  +I V S+RP+GQRAVLKFA +T A  IAGR TPG FTNQ+Q +F EPRLL++TDP  D QPI EA+  NIP IAFC+TDSP+RYVDI IP N K  HSIG ++WLLAR VL++
Sbjct:    8 LKLTEGDITKMLSANTHLGAENTNFQMEQYIYKRRSDGINIFNLRKTWEKLLLAARAIAAVEHAAEIFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPAEDKQPITEASYVNIPVIAFCNTDSPLRYVDIAIPCNTKSAHSIGLMWWLLAREVLRL 185          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA1_SCHJY (40S ribosomal protein S0-A OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0a PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.043e-59
Identity = 110/184 (59.78%), Postives = 140/184 (76.09%), Query Frame = 3
Query:   78 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            A  P  L+  + DI+ +LAA  H+G+KN D +ME YV+KRR+DG++IIN+GKTWEK+ +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I TDPR D Q IKEA+  NIP I+ CDTDSP+ +VD+ IP NNKG  SIG ++WLLAR VL++
Sbjct:    4 AGRPSILNATDDDIKQLLAASCHIGSKNLDVRMENYVWKRRSDGVHIINIGKTWEKIVLAARVIATIENPADVCVVSSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIATDPRADAQAIKEASYVNIPVISLCDTDSPLAHVDVAIPTNNKGYKSIGLVWWLLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_MALGO (40S ribosomal protein S0 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.362e-59
Identity = 110/181 (60.77%), Postives = 137/181 (75.69%), Query Frame = 3
Query:   87 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            P  L+    DI ++LAA+ H+GTKNC+  M  YV KRR DGI++IN+GKTWEKL  AARV+ A+ENP DI V S+R YG RAV KFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+E+A  NIP IA CDTD+P+R+VDI IP NNKG+HSIG L+WLL R  L++
Sbjct:    6 PAILNPTPEDISLLLAAQTHIGTKNCEKAMLPYVHKRRADGIHLINIGKTWEKLVFAARVLAAVENPADICVISSRTYGHRAVHKFAANTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIRESAYVNIPVIALCDTDAPLRHVDIAIPGNNKGRHSIGLLWWLLCREFLRL 186          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA3_SCHJY (40S ribosomal protein S0-C OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0c PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.779e-59
Identity = 109/181 (60.22%), Postives = 137/181 (75.69%), Query Frame = 3
Query:   87 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            P  L+  E DI+ +LAA  H+G+KN + +ME YV+KRR DG+ IIN+GKTWEK+ +AAR+I  +ENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  +F EPRL+I TDPR D Q IKEA+  NIP IA CDTDSP+ +VD+ IP NNKG  SIG ++WLLAR VL++
Sbjct:    8 PSVLNATEEDIKQLLAASCHIGSKNLEIRMENYVWKRRADGVNIINIGKTWEKIVLAARIIATVENPADVCVVSSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTFREPRLIIATDPRADAQAIKEASYVNIPVIALCDTDSPLAHVDVAIPTNNKGYKSIGLVWWLLAREVLRL 188          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_NANOT (40S ribosomal protein S0 OS=Nannizzia otae (strain CBS 113480) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.324e-59
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  114 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            D++MML A+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CD DSP  +VD+ IP NNKG+H+IG ++W+LAR VL++
Sbjct:   16 DMEMMLTAQCHLGSKNMQTHMEPYLWKTRPDGVNVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDADSPTEFVDVAIPTNNKGRHAIGLVWWMLAREVLRL 187          
BLAST of CX291788 vs. ExPASy Swiss-Prot
Match: RSSA_USTMA (40S ribosomal protein S0 OS=Ustilago maydis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.035e-59
Identity = 105/181 (58.01%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   87 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQM 629
            P  L+  E DI ++LAA+ H+GTKN D QM  Y++KRR DGI+++N+GKTWEK+  AAR++ AIENP DI V S R YG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+EA+  NIP I+F D+DSP+++VD+ IP N +G+HS+G L+WLL R VL++
Sbjct:    5 PAALNPTEEDISLLLAAQTHIGTKNADKQMAPYIYKRRADGIHLLNIGKTWEKIVFAARILAAIENPADICVISGRQYGHRAVLKFAAQTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIREASYVNIPCISFVDSDSPLKFVDVAIPGNVRGRHSVGLLWWLLCRTVLRI 185          
The following BLAST results are available for this feature:
BLAST of CX291788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_PLAF74.682e-6062.7140S ribosomal protein SA OS=Plasmodium falciparum ... [more]
RSSA_PLAYO1.043e-5962.7140S ribosomal protein SA OS=Plasmodium yoelii yoel... [more]
RSSA_PLACH1.043e-5962.7140S ribosomal protein SA OS=Plasmodium chabaudi GN... [more]
RSSA_PLABA1.043e-5962.7140S ribosomal protein SA OS=Plasmodium berghei (st... [more]
RSSA_MACHI1.043e-5962.3640S ribosomal protein SA OS=Maconellicoccus hirsut... [more]
RSSA1_SCHJY1.043e-5959.7840S ribosomal protein S0-A OS=Schizosaccharomyces ... [more]
RSSA_MALGO1.362e-5960.7740S ribosomal protein S0 OS=Malassezia globosa (st... [more]
RSSA3_SCHJY1.779e-5960.2240S ribosomal protein S0-C OS=Schizosaccharomyces ... [more]
RSSA_NANOT2.324e-5962.2140S ribosomal protein S0 OS=Nannizzia otae (strain... [more]
RSSA_USTMA3.035e-5958.0140S ribosomal protein S0 OS=Ustilago maydis GN=RPS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04005A01SK FlavFr1 Citrus clementina cDNA clone C04005A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291788 ID=CX291788; Name=CX291788; organism=Citrus clementina; type=EST; length=629bp
GGCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTT
TGAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTC
TCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGG
GTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGA
AACGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACA
GATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTG
TCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAG
TACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTAC
CAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAG
ATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATT
CCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATAT
TGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCT
GGCTTTTGGCTAGAATGGTTCTCCAGATG
back to top