CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA ++  E   +Y++R R + E
Sbjct:   63 FRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 286
            +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA L   ++  Y  +V+E  E+
Sbjct:   49 WKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEK 145          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:   60 FRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 286
            FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LT IQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:   51 FKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEK 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+ ++G IC+++L+  W     +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:   60 FRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTE 153          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 33/90 (36.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            FK  +Q  ++YP+ PP V+ +++++HPNI  +G++CL+IL+  W+P+ ++ +IL  +Q L   PN   P N EAA    ++ + +  RVR
Sbjct:   70 FKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W     +  +L +I+ LL  PNP S  N EA RL  EN  EY  R R + E
Sbjct:   60 FRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTE 153          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  L+ +N+ E+ R+V+
Sbjct:   54 FNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 29/90 (32.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            F+ +     ++P++PP V+ + +++HPNI  +G++CL+IL+  W P+  + A++  +Q L  +PN + P N +AA   + N+ E+ R V+
Sbjct:   71 FRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.431e-14
Identity = 34/88 (38.64%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNR 262
            F + ++   +YP KPP ++F ++++HPNI +  G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+
Sbjct:   52 FVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBE2S_DROME6.425e-1537.23Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC6_ARATH6.425e-1537.11Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UB2SA_XENLA6.425e-1538.30Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2T_BOVIN8.391e-1537.37Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2S_RANCA8.391e-1538.30Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC12_SCHPO8.391e-1536.67NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2S_XENTR1.096e-1438.30Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBC7_YEAST1.096e-1436.89Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC12_YARLI1.096e-1432.22NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC1_YEAST1.431e-1438.64Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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