CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            F++ L  + D+P+ PP   F++++FHPN+ ++G IC++ L+  W+P   +  +L+ ++ LL +P P S  N +A ++  EN  EY R  R
Sbjct:   59 FRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHAR 148          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F L +   E YP +PP +RF++ ++HPNI + G ICLDIL    +  W P  +++ +LTSIQ L+ +PNP+ P  ++ +  F     +YNR V     + WT
Sbjct:   51 FNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEF-----KYNRAVFFSNAKKWT 147          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 286
            F  +L+F  DYP +PPT+ F +R++HPN  ++G++CL IL+ Q + P   + ++L  I  LL +PNP+ P  +  A  +  ++  +++  R+ VEQ
Sbjct:   56 FHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQ 151          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            FK+ L   +D+P  PP   F++++FHPN+  +G IC++ L+  W     +  IL +I+ LL  PNP S  N EA +L  E    Y+ R R + E
Sbjct:   62 FKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTE 155          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.525e-13
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 232
            F+L +    +YP +PPT++FV+++FHPNI +  G ICLD+L+  WS IY + ++  SI +LL  P  +SP N +A  L
Sbjct:   50 FELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNL 127          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIV 280
            +K+ ++   +YP K P++ FV+R+FHPNI    GS+CLD++   WSP++D+  I    +  LL  PN + P N EAA L       Y  +VR+ +
Sbjct:   49 WKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYI 143          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVE 283
            F++ L   +D+P  PP   F++++FHPN+   G IC+++L+  W     +  +L +I+ LL  PNP S  N EA +L  E+ +EY  R   + E
Sbjct:   60 FRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTE 153          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:   56 YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC22_ARATH7.103e-1434.44Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBE2T_XENLA2.067e-1338.24Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC14_SCHPO2.067e-1335.42Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2S_BRAFL2.699e-1337.23Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBCX_DICDI3.525e-1343.59Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC8_SCHPO7.854e-1337.89Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBE2S_DANRE1.026e-1235.11Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBE2K_MOUSE1.026e-1235.16Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.026e-1235.16Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.026e-1235.16Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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