CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.509e-35
Identity = 67/97 (69.07%), Postives = 82/97 (84.54%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 292
            F+L L+F EDYPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA LF ++K +Y +RV+E VE+SW
Sbjct:   53 FRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.509e-35
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*K 307
            F+L L+F E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA LF ++K +Y +RV+E VE+SW  D K
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDLK 154          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 67/100 (67.00%), Postives = 83/100 (83.00%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 301
            F+L L+F E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA LF ++K +Y +RV+E VE+SW  D
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDD 152          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 64/98 (65.31%), Postives = 83/98 (84.69%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F++ LQF E YPNKPP V+FVS+MFHPN+Y+ G +CLDILQN+WSP YDVAAILTS+QSLL DPN +SPAN EA+ L+ +++++Y +RVR+ VE SWT
Sbjct:   53 FRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.277e-35
Identity = 67/100 (67.00%), Postives = 83/100 (83.00%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 301
            F+L L+F E+YPNKPP V+F+S MFHPN+YA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA LF ++K +Y +RV+E VE+SW  D
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWEDD 152          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 301
            F+L LQF E YPNKPP+V+F+S MFHPN+YA G +CLDILQN+WSP YDV++ILTSIQSLL DPN +SPAN EAA L+ +++ +Y +RVRE VE SW  D
Sbjct:   53 FRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNED 152          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.589e-35
Identity = 65/97 (67.01%), Postives = 81/97 (83.51%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 292
            F+L + F E YPNKPP V+F+S+MFHPN+Y  G +CLDILQN+WSP YDVAAILTSIQSLL DPN +SPAN EA+ L+ +N++EY +RVRE VE+SW
Sbjct:   53 FRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 7.300e-35
Identity = 64/97 (65.98%), Postives = 81/97 (83.51%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 292
            F+L + F E YPNKPP+V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  S AN EA+ L+ +N++EY++RVRE VE+SW
Sbjct:   53 FRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.300e-35
Identity = 65/97 (67.01%), Postives = 81/97 (83.51%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 292
            F+L + F E YPNKPP V+F+S+MFHPN+Y  G +CLDILQN+WSP YDVAAILTSIQSLL DPN +SPAN EA+ L+ +N++EY +RVRE VE+SW
Sbjct:   53 FRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSW 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 64/100 (64.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD 301
            F+L L F E YPNKPP V+F+S MFHPN+YA G +CLDILQN+WSP YDV++ILTS+QSLL DPN +SPAN EAA L+ +++  Y +RVRE VE SW  D
Sbjct:   53 FRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSWNDD 152          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC2_CANGA2.509e-3569.07Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO2.509e-3566.67Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_YEAST3.277e-3567.00Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_YARLI3.277e-3565.31Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_KLULA3.277e-3567.00Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_DEBHA4.280e-3566.00Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_ASPFU5.589e-3567.01Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_NEUCR7.300e-3565.98Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_EMENI7.300e-3567.01Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_CANAL1.798e-3364.00Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
back to top