CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.633e-20
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F +++ F+ DYP KPP V F ++++HPNI + GSICLDIL+ QWSP    + +L SI SLL DPNPN P   E A L+  +K +Y     E   Q WT
Sbjct:   51 FTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKY-----ESTAQKWT 143          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ESTARSWT 142          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.663e-20
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:   50 FFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   ++WT
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----EATARNWT 142          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.131e-19
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:   50 FFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.478e-19
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:   50 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 142          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            +KLT+ F E+YP +PP  RF   +FHPN+Y  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  +F ++K EY +RVR
Sbjct:   58 YKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.930e-19
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F + + F  DYP KPP V F +++FHPNI ++G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E + +SWT
Sbjct:   50 FLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKY-----EAMARSWT 142          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.521e-19
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA L+ +N+  Y + + E
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW-QNQTAYKKHLHE 168          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.292e-19
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 295
            F +++ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:   50 FLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ESTARSWT 142          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC12_ARATH6.633e-2047.96Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC28_ARATH8.663e-2045.92Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC1_COLGL8.663e-2047.25Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC8_ARATH1.131e-1945.92Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC1_MAGGR1.131e-1947.25Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_SOLLC1.478e-1945.92Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_SCHPO1.930e-1947.83SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC29_ARATH1.930e-1945.92Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBE2C_XENLA2.521e-1949.45Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBC11_ARATH3.292e-1944.90Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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