CX291793

Overview
NameCX291793
Unique NameCX291793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 271
            + L ++FTEDYP+KPP  RF    FHPN+Y  G++CL IL  +  W P   +  +L  IQ LL +PNP SPA      LF  NK EY+++V+
Sbjct:   58 YPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVK 149          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.299e-19
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICL------------DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 289
            F   + F ++YPN PPTVRF S M+HPN+Y DG +C+            ++   +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E + E+ ++VR  V +S
Sbjct:   57 FNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKS 164          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.251e-18
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 298
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E   +  T+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.251e-18
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 289
            F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + + + E+ ++V   V +S
Sbjct:   54 FNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKS 162          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 298
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E   +  T+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 286
            ++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA ++++ K EY + +    E+
Sbjct:   81 YRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKKYLDAFYEK 174          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:   51 FFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.634e-18
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:   51 FFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
BLAST of CX291793 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.134e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 2
Query:    2 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 274
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
The following BLAST results are available for this feature:
BLAST of CX291793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
UBC9_DICDI4.299e-1945.65Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC7_WHEAT4.299e-1939.81Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBE2C_MACFA1.251e-1844.44Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBC7_ARATH1.251e-1839.45Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBE2C_HUMAN1.634e-1844.44Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_DROME1.634e-1845.26Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC5_YEAST1.634e-1845.05Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_YEAST1.634e-1845.05Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBE2C_MOUSE2.134e-1847.25Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_BOVIN2.134e-1847.25Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC04005A09SK FlavFr1 Citrus clementina cDNA clone C04005A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291793 ID=CX291793; Name=CX291793; organism=Citrus clementina; type=EST; length=650bp
GTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCTCCAA
CAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGATGGA
AGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGT
TGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAATCCAA
ACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAAACGA
GAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAGCCGA
CTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAATAAAAGAT
GAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGTACTCCGTA
ATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCAGATTCTT
CCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATTTCCA
TCTTCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCATT
TGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTTAAGAC
AACCTCAGAGGAGCTCTTTTTCATTGGAATTATTTAGTCGGATTTTTGGA
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