CX291850

Overview
NameCX291850
Unique NameCX291850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.062e-41
Identity = 94/218 (43.12%), Postives = 130/218 (59.63%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            + +YLS DPYMR RMS     D  S++P    G  + G  V++VV+S HP+++ GD V G +GW++Y  I +   L K+       S+  G+LGMPG TA+ G  +I  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  ++  +   K C P+GIDIY+E+VGGK+ DAVL  +    RI  CG++S YN
Sbjct:   44 RTVYLSLDPYMRGRMS-----DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYN 254          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.174e-40
Identity = 95/214 (44.39%), Postives = 127/214 (59.35%), Query Frame = 3
Query:   18 LYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            L+L+ DPYMR      ++        G  + G  VAKVV+S +    KG +V  + GW  +S+   K+ + L       +PLS   G +GMPG+TA+ G  EIC  K GE + V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P+G D YF++VGG+  + V+  M+  GRIA CG IS YN
Sbjct:   42 LFLTVDPYMRVAAKRLKE--------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYN 246          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.282e-33
Identity = 90/222 (40.54%), Postives = 120/222 (54.05%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHH--TDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGCY-VVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            + LYLS DPYMR RM  N+D      TP      ++G GV  + +S H  F KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G L GQ  +L+GC  VVG  G+ EK   L ++ GFD A NYKE N  +   K C P G+D+YF++VGG + D V+  M  +  I  CG ISQYN
Sbjct:   42 RTLYLSVDPYMRCRM--NEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLC-PAGVDVYFDNVGGDISDTVISQMNQNSHIILCGQISQYN 260          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.537e-32
Identity = 86/222 (38.74%), Postives = 120/222 (54.05%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHH--TDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGCY-VVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            + LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G + GQ   L+GC  VVG  G+ EK  LL ++ GFD A NYK++N  +   + C P G+D+YF++VGG + D V+  M  +  I  CG ISQYN
Sbjct:   42 RTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKDNVAEQLRESC-PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYN 260          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 85/222 (38.29%), Postives = 119/222 (53.60%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDFSSFTP---GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHH--TDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGCY-VVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            + LYLS DPYMR RM  N+D      TP      ++G G+  + +S H    KGD V       +  +I +   L K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G + GQ    +GC  VVG  G+ EK  LL ++ GFD A NYK++N  +   + C P G+D+YF++VGG + D V+  M  +  I  CG ISQYN
Sbjct:   42 RTLYLSVDPYMRCRM--NEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESC-PAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYN 260          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 84/222 (37.84%), Postives = 120/222 (54.05%), Query Frame = 3
Query:    6 RGKNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHH--TDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGCY-VVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            R + LYLS DPYMR +M+     D+ + +      +G G+  + +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G L GQ   L+GC  VVG  G+ EK   L ++ GFD A NYK  N  +   + C P+G+D+YF++VGG + +AV+  M  +  I  CG ISQYN
Sbjct:   40 RVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNYKTGNVAEQLREAC-PDGVDVYFDNVGGDISNAVISQMNQNSHIILCGQISQYN 260          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 83/220 (37.73%), Postives = 120/220 (54.55%), Query Frame = 3
Query:   12 KNLYLSCDPYMRARMSFNQDPDF-SSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHH--TDVPLSYYTGILGMPGMTAWAGFYEICAPKKG--EYIYVSAASGAVGQLVGQFAKLMGCY-VVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            + LYLS DPYMR +M+ +   D+ + +      +G G+  V +S H +  KGD V       +   I +  GL K+     D  LSY+ G +GMPG+T+  G  E      G  + + VS A+GA G L GQ   L+GC  VVG  G++EK   L ++ GFD A NYK  N  +   + C P G+D+YF++VGG + +AV+  M  +  I  CG ISQY+
Sbjct:   42 RTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREAC-PGGVDVYFDNVGGDISNAVISQMNENSHIILCGQISQYS 260          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  273 ILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAK-LMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQY 650
            +L +  +TA     E+   KKG+   V+AA+G  GQ+  Q  K + GC V+G+  S EK E LK+  G D   NYK E+ LD  L    P+G+D+ +E VGG   +  + ++ +H R+   G IS Y
Sbjct:  125 VLPVSALTAAVALGEVGRVKKGDVALVTAAAGGTGQIAVQLLKHVYGCTVIGTCSSEEKAEFLKS-IGCDHVINYKTES-LDGRLHELCPKGVDVVYECVGGHTFNDAVRHVAVHARVVIIGSISSY 249          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: YMN1_YEAST (Uncharacterized membrane protein YML131W OS=Saccharomyces cerevisiae GN=YML131W PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.307e-15
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 3
Query:   21 YLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDV-PLSYYTGILGMPGMTAWAGFYEICAPKKGEYIY-----VSAASGAVGQLVGQFA--KLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEG-IDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQYN 653
            YLS DP  +  +S           PG  I   G+ KV+ S +  F  GD V   TGW  +++I  +N QGL K+    V  L +Y  +LG   +TA+  F+     ++ E  Y     +S A+GAVG +  Q A        V+  AG  EKV  +++        +YK+ +     ++    E  +D + ++VG  +L+A +L ++    + ACG IS YN
Sbjct:   53 YLSNDPAQKFWISSMDKNYAKGVQPGEIIPARGIGKVLASRNKAFSPGDYVSAVTGWTTHAIISQENVQGLRKLDKNKVGKLWWYLSVLGGTSLTAYFIFFTYAQLQEREEDYGKVYLISGAAGAVGTVCIQLALNVFKASKVIAIAGGPEKVAFVESFGDNVVGVDYKDPSFKQKLIEAAGGENTVDYFIDNVGSNVLEAGVLLLKQRAMLIACGAISAYN 274          
BLAST of CX291850 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  288 GMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVELLKNKFGFDDAFNYKEENDLDAALKRCFPEGIDIYFEHVGGKMLDAVLLNMRLHGRIAACGMISQY 650
            G TA+    E+    +G+ + V+AA+G  GQ   Q +K+  C+V+G+  S EK   LK+  G D   NY+ E  ++  LK+ +PEG+D+ +E VGG M D  +  +   GR+   G IS Y
Sbjct:  157 GTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFLKS-IGCDRPINYRTE-PVETVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGY 275          
The following BLAST results are available for this feature:
BLAST of CX291850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
YNCB_ECOLI1.062e-4143.12Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_HUMAN1.174e-4044.39Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR2_BOVIN5.282e-3340.54Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB1.537e-3238.74Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN5.840e-3238.29Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT2.219e-3137.84Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE1.879e-3037.73Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
QOR_LEIAM1.001e-1537.01Probable quinone oxidoreductase OS=Leishmania amaz... [more]
YMN1_YEAST1.307e-1529.73Uncharacterized membrane protein YML131W OS=Saccha... [more]
ZADH2_MOUSE1.707e-1536.36Zinc-binding alcohol dehydrogenase domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC04006A06SK FlavFr1 Citrus clementina cDNA clone C04006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291850 ID=CX291850; Name=CX291850; organism=Citrus clementina; type=EST; length=654bp
CGGCACGAGGCAAGAATCTTTACTTGTCTTGCGATCCTTACATGAGAGCT
CGCATGTCCTTTAATCAAGATCCTGATTTCTCTTCTTTCACTCCTGGCTC
TCCCATAGAAGGATTTGGAGTGGCTAAGGTGGTGGATTCAGGGCACCCAG
AATTCAAGAAAGGAGATTTAGTCTGGGGAACAACTGGGTGGGAAGAGTAT
AGTCTCATAAAAAATCCTCAGGGCCTCTTTAAAATTCATCACACTGATGT
TCCCCTTTCTTATTATACTGGAATTCTTGGTATGCCTGGGATGACAGCTT
GGGCTGGTTTTTATGAAATTTGTGCTCCAAAGAAAGGCGAATACATCTAT
GTTTCTGCAGCATCTGGTGCAGTTGGTCAGCTTGTTGGGCAATTTGCAAA
GTTGATGGGTTGCTATGTTGTTGGAAGTGCTGGCAGTAGAGAAAAGGTTG
AACTACTAAAGAACAAGTTTGGATTTGATGATGCTTTCAATTATAAAGAG
GAGAACGACTTGGATGCTGCTTTGAAAAGGTGCTTTCCTGAAGGCATTGA
CATTTACTTTGAGCACGTAGGGGGAAAAATGCTGGATGCAGTGTTACTAA
ACATGAGACTTCACGGACGCATTGCAGCGTGTGGAATGATCTCACAGTAC
AATC
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