CX292056

Overview
NameCX292056
Unique NameCX292056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_PIG (NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEG-AYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH +      +W ++ +G A++Y+CGDA+ MARDV  T   IV EQG ++ ++A   VK L   GRY  DVW
Sbjct:  604 YVQHLLKRDKEHLWKLIHDGGAHIYICGDARNMARDVQNTFCDIVAEQGPMEHAQAVDYVKKLMTKGRYSLDVW 677          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERPS (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pseudotuberculosis GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  546 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 618          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERPP (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pestis (strain Pestoides F) GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  540 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 612          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERPN (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  540 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 612          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERPE (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pestis GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  534 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 606          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERPA (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  534 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 606          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_YERP3 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++WN + +GA++YVCGDA  MA+DV + L  +V   G++D+ +A+  +  L+   RY RDV+
Sbjct:  540 YVQDKLREQGAELWNWIQQGAHIYVCGDANRMAKDVEQVLLDVVALHGAMDAEQADEYLSELRQARRYQRDVY 612          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHESA (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shewanella sp. (strain ANA-3) GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH++ E+   +W  L  GA+LY+CGDA+ MA+DVH+ L  +  E G L S  AE   + L+   RY +DV+
Sbjct:  532 YVQHRIKEQGQTLWQWLQNGAHLYICGDAERMAKDVHQALLAVAVEFGGLSSEAAEEYFETLRSHKRYQKDVY 604          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: REDA_DICDI (NADPH oxidoreductase A OS=Dictyostelium discoideum GN=redA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 29/73 (39.73%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ++++E S  I ++++ G ++Y+CGDAK MA  VH TL  I+ +  S+D + A++++  L+   RY +DVW
Sbjct:  558 YVQNRLLENSQQICDLINAGGHIYICGDAKSMAPQVHETLSLIITKHMSIDEADAQALLHKLEKEKRYQKDVW 630          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHEON (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shewanella oneidensis GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH++ E+   +W  L  GA+LY+CGDA+ MA+DVH+ L  +  E G L S  AE   + L+   RY +DV+
Sbjct:  535 YVQHRIKEQGQALWQWLQNGAHLYICGDAERMAKDVHQALLAVAVEFGGLSSEAAEEYFETLRSHKRYQKDVY 607          
The following BLAST results are available for this feature:
BLAST of CX292056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
NCPR_PIG2.759e-1244.59NADPH--cytochrome P450 reductase OS=Sus scrofa GN=... [more]
CYSJ_YERPS2.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_YERPP2.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_YERPN2.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_YERPE2.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_YERPA2.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_YERP32.759e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_SHESA2.759e-1243.84Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
REDA_DICDI3.603e-1239.73NADPH oxidoreductase A OS=Dictyostelium discoideum... [more]
CYSJ_SHEON3.603e-1243.84Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04010A05SK FlavFr1 Citrus clementina cDNA clone C04010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292056 ID=CX292056; Name=CX292056; organism=Citrus clementina; type=EST; length=551bp
AGAGTCGATTGAACCATTTTTGGTTCTTATATGGAAAATCTGAGTTCACA
ATGCTACGCCTAGCGAGTAACGATAATTACCATATTCTGTATTTATAAAT
TACATGAACAAAAAATTCCTTCATATGGTAAGGGTAAAAAAGAAAAAAAA
AAAGAAAAAAAGAATCGCAGTTGCCTTTTCGGGGTGCGGGAGGCAGGACC
CACGCAAATAGCCTTTCCGTTGAGTGCTTTTCAAATGAGCTGACCCGAGA
TAACATATTTATGTATGTATTATGCAATCACCTTCGAATTTTACTAGTGA
GAAGACTCAGGATCAGAAGGATGGTCACCATACATCACGTAGATACCTGC
CAGTCATTTGCAAATTCTTCACCATGCTCTCAGCTTTAGAGCTGTCAAGA
GATCCCTGCTCTTGAACAATAGTGTGCAGAGTTCGGTGGACATCTCTAGC
CATGCCTTTGGCATCACCACAAACATACAAGTAAGCTCCCTCAGAAAGCA
TGTTCCAGATATCCCAAGACTTCTCCATCATTTTATGCTGCACATATTCC
T
back to top