CX292056

Overview
NameCX292056
Unique NameCX292056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_PHOLL (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Photorhabdus luminescens subsp. laumondii GN=cysJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+   +W  + EGA+LYVCGDA  MA+DV   L  I+ E G +D+ +A+  +  L+   RY RDV+
Sbjct:  528 YVQDKLREQGEAVWCWIKEGAHLYVCGDANRMAKDVEHALLDIIAEHGGMDTEQADEFLSELRFERRYQRDVY 600          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_MOUSE (NADPH--cytochrome P450 reductase OS=Mus musculus GN=Por PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEG-AYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH +      +W ++ EG A++YVCGDA+ MA+DV  T + IV E G ++ ++A   VK L   GRY  DVW
Sbjct:  604 YVQHLLKRDKEHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 677          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SODGM (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Sodalis glossinidius (strain morsitans) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ ++ E+  ++W  + +GA++YVCGDA  MARDV + L  +V E G +D  +A+  +  L++  RY RDV+
Sbjct:  531 YVQDRVREQGAEVWRWIQQGAHIYVCGDANRMARDVEQALVAVVAEYGCMDPEQADEYLSELRIERRYQRDVY 603          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHESM (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shewanella sp. (strain MR-4) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH++ E+   +W  L  GA+LY+CGDA+ MA+DVH+ L  +  E G L S  AE   + L+   RY +DV+
Sbjct:  532 YVQHRIKEQGQTLWQWLQNGAHLYICGDAERMAKDVHQALLGVAVEFGGLSSEAAEEYFETLRSHKRYQKDVY 604          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: NCPR_RAT (NADPH--cytochrome P450 reductase OS=Rattus norvegicus GN=Por PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEG-AYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQH +      +W ++ EG A++YVCGDA+ MA+DV  T + IV E G ++ ++A   VK L   GRY  DVW
Sbjct:  604 YVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 677          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHISS (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella sonnei (strain Ss046) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHIFL (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella flexneri GN=cysJ PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHIF8 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella flexneri serotype 5b (strain 8401) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_SHIDS (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599          
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ENTS8 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = -3
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  L EGA+LYVCGDA  MA+DV + L  ++   G +D+  A+  +  L++  RY RDV+
Sbjct:  528 YVQDKIREQGAELWRWLQEGAHLYVCGDANRMAKDVEQALLEVIAAYGGMDAEAADEYLSELRVERRYQRDVY 600          
The following BLAST results are available for this feature:
BLAST of CX292056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CYSJ_PHOLL3.603e-1243.84Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
NCPR_MOUSE4.706e-1244.59NADPH--cytochrome P450 reductase OS=Mus musculus G... [more]
CYSJ_SODGM4.706e-1241.10Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_SHESM4.706e-1243.84Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
NCPR_RAT6.146e-1244.59NADPH--cytochrome P450 reductase OS=Rattus norvegi... [more]
CYSJ_SHISS6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_SHIFL6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_SHIF86.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_SHIDS6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ENTS86.146e-1242.47Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]

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Properties
Property NameValue
Genbank descriptionC04010A05SK FlavFr1 Citrus clementina cDNA clone C04010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292056 ID=CX292056; Name=CX292056; organism=Citrus clementina; type=EST; length=551bp
AGAGTCGATTGAACCATTTTTGGTTCTTATATGGAAAATCTGAGTTCACA
ATGCTACGCCTAGCGAGTAACGATAATTACCATATTCTGTATTTATAAAT
TACATGAACAAAAAATTCCTTCATATGGTAAGGGTAAAAAAGAAAAAAAA
AAAGAAAAAAAGAATCGCAGTTGCCTTTTCGGGGTGCGGGAGGCAGGACC
CACGCAAATAGCCTTTCCGTTGAGTGCTTTTCAAATGAGCTGACCCGAGA
TAACATATTTATGTATGTATTATGCAATCACCTTCGAATTTTACTAGTGA
GAAGACTCAGGATCAGAAGGATGGTCACCATACATCACGTAGATACCTGC
CAGTCATTTGCAAATTCTTCACCATGCTCTCAGCTTTAGAGCTGTCAAGA
GATCCCTGCTCTTGAACAATAGTGTGCAGAGTTCGGTGGACATCTCTAGC
CATGCCTTTGGCATCACCACAAACATACAAGTAAGCTCCCTCAGAAAGCA
TGTTCCAGATATCCCAAGACTTCTCCATCATTTTATGCTGCACATATTCC
T
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