CX292056

Overview
NameCX292056
Unique NameCX292056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOUT (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli (strain UTI89 / UPEC) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOLI (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli (strain K12) GN=cysJ PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOLC (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOL6 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O6 GN=cysJ PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOL5 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOK1 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O1:K1 / APEC GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECOHS (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O9:H4 (strain HS) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECO57 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O157:H7 GN=cysJ PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_ECO24 (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ E+  ++W  +++GA++YVCGDA  MA+DV + L  ++ E G +D+  A+  +  L++  RY RDV+
Sbjct:  527 YVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 599
[Close]
BLAST of CX292056 vs. ExPASy Swiss-Prot
Match: CYSJ_MANSM (Sulfite reductase [NADPH] flavoprotein alpha-component OS=Mannheimia succiniciproducens (strain MBEL55E) GN=cysJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.027e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = -3 
Query:  328 YVQHKMMEKSWDIWNMLSEGAYLYVCGDAKGMARDVHRTLHTIVQEQGSLDSSKAESMVKNLQMTGRYLRDVW 546
            YVQ K+ EKS  +W  L EGA++YVCGDA  MA+DV   L  ++  +G L    AE  + +L+   RY RDV+
Sbjct:  525 YVQDKIREKSTALWQWLQEGAHVYVCGDASKMAKDVENALLEVIAREGKLTPEDAEEYLNDLREDKRYQRDVY 597
The following BLAST results are available for this feature:
BLAST of CX292056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CYSJ_ECOUT6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOLI6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOLC6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOL66.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOL56.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOK16.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECOHS6.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECO576.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_ECO246.146e-1239.73Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]
CYSJ_MANSM8.027e-1245.21Sulfite reductase [NADPH] flavoprotein alpha-compo... [more]

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Properties
Property NameValue
Genbank descriptionC04010A05SK FlavFr1 Citrus clementina cDNA clone C04010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292056 ID=CX292056; Name=CX292056; organism=Citrus clementina; type=EST; length=551bp
AGAGTCGATTGAACCATTTTTGGTTCTTATATGGAAAATCTGAGTTCACA
ATGCTACGCCTAGCGAGTAACGATAATTACCATATTCTGTATTTATAAAT
TACATGAACAAAAAATTCCTTCATATGGTAAGGGTAAAAAAGAAAAAAAA
AAAGAAAAAAAGAATCGCAGTTGCCTTTTCGGGGTGCGGGAGGCAGGACC
CACGCAAATAGCCTTTCCGTTGAGTGCTTTTCAAATGAGCTGACCCGAGA
TAACATATTTATGTATGTATTATGCAATCACCTTCGAATTTTACTAGTGA
GAAGACTCAGGATCAGAAGGATGGTCACCATACATCACGTAGATACCTGC
CAGTCATTTGCAAATTCTTCACCATGCTCTCAGCTTTAGAGCTGTCAAGA
GATCCCTGCTCTTGAACAATAGTGTGCAGAGTTCGGTGGACATCTCTAGC
CATGCCTTTGGCATCACCACAAACATACAAGTAAGCTCCCTCAGAAAGCA
TGTTCCAGATATCCCAAGACTTCTCCATCATTTTATGCTGCACATATTCC
T
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