CX292065

Overview
NameCX292065
Unique NameCX292065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  394 TRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            TRR+ +RGVRQRPWG+WAAEIRDP +  RVWLGT++T
Sbjct:   93 TRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDT 129          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            ++  YRGVRQRPWGK+AAEIRDPK+A RVWLGTFET
Sbjct:  132 KKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFET 167          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R+  YRG+R+RPWGKWAAEIRDP+K  RVWLGTF T
Sbjct:   75 RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNT 110          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:  394 TRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            T  R +RGVRQRPWGKWAAEIRDP +  RVWLGTF+T
Sbjct:   82 TATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDT 118          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            R+  +RG+RQRPWGKWAAEIRDP+K  RVWLGTF +
Sbjct:  116 RKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNS 151          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.312e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:  391 GTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            G  ++ YRGVRQRPWGKWAAEIRDP++  R+WLGTF T
Sbjct:  111 GQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFAT 148          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  394 TRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            T ++HYRGVRQRPWGK+AAEIRDP +K  RVWLGTF+T
Sbjct:  140 TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 177          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  394 TRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            T ++HYRGVRQRPWGK+AAEIRDP +K  RVWLGTF+T
Sbjct:  133 TEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 170          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.631e-11
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1
Query:  388 EGTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            +G +  HYRGVR+RPWG++AAEIRDP K +RVWLGTF+T
Sbjct:   20 DGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 58          
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  397 RRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            + +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET
Sbjct:  113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 149          
The following BLAST results are available for this feature:
BLAST of CX292065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PTI6_SOLLC1.935e-1172.97Pathogenesis-related genes transcriptional activat... [more]
EF109_ARATH1.935e-1180.56Ethylene-responsive transcription factor ERF109 OS... [more]
RAP23_ARATH3.301e-1175.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
CRF1_ARATH3.301e-1175.68Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF1_ORYSJ4.312e-1172.22Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF4_ARATH4.312e-1171.05Ethylene-responsive transcription factor CRF4 OS=A... [more]
ERF5_TOBAC5.631e-1176.32Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY5.631e-1176.32Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF4_TOBAC5.631e-1169.23Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF101_ARATH7.354e-1181.08Ethylene-responsive transcription factor 2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC04010B02SK FlavFr1 Citrus clementina cDNA clone C04010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292065 ID=CX292065; Name=CX292065; organism=Citrus clementina; type=EST; length=506bp
AACTTCCATGTCTACAGGTCTGTTAACAAAACCAAACAAAACAATTACTT
TTTCCGTTGTATGTAATAAAATCCAATAAAAAAATTATTGCATTACATTA
GAGTTTATAGAAGTGCTTATTGTAACTGCAAAAAAGTGGATCATCGAAGG
CATGGAAAGCGGCCACTTCCACTGGAAGCATCACCGGAGGAGAAAGAGAA
AGAACAAGACAACAACTTCCCTGCTTGGACTACTCATGAATCAGACATGT
CTGCCATGGTTTCCGCTCTTACACAAGTAATTGGCACCACTACCACCGAC
GCCGACGCCGACCCCTCGCCGGCAGCCGTTAAAGAAGAATCCTCCGATAA
CCCACTTCAACAAACTCAAACTCAAGATCAAGATCAAGAAGGTACAAGGA
GGAGACATTACAGAGGAGTAAGACAAAGACCTTGGGGCAAATGGGCAGCC
GAAATTAGAGACCCTAAAAAGGCAGCACGAGTATGGCTAGGTACATTTGA
GACTGC
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