CX292065

Overview
NameCX292065
Unique NameCX292065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:  391 GTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFET 504
            G +  HYRGVR+RPWG++AAEIRDP K +RVWLGTF+T
Sbjct:   21 GVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDT 58
[Close]
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  403 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            RHYRGVRQRPWGK+AAEIRDP K  ARVWLGT+ET
Sbjct:   97 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYET 131
[Close]
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  403 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            RHYRGVRQRPWGK+AAEIRDP K  ARVWLGT+ET
Sbjct:  101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYET 135
[Close]
BLAST of CX292065 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  403 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFET 504
            +HYRGVRQRPWGK+AAEIRDP K  ARVWLGTFET
Sbjct:  146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 180
The following BLAST results are available for this feature:
BLAST of CX292065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ERF4_NICSY9.605e-1171.05Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF2_TOBAC9.605e-1185.71Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY9.605e-1185.71Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF100_ARATH9.605e-1185.71Ethylene-responsive transcription factor 1A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC04010B02SK FlavFr1 Citrus clementina cDNA clone C04010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292065 ID=CX292065; Name=CX292065; organism=Citrus clementina; type=EST; length=506bp
AACTTCCATGTCTACAGGTCTGTTAACAAAACCAAACAAAACAATTACTT
TTTCCGTTGTATGTAATAAAATCCAATAAAAAAATTATTGCATTACATTA
GAGTTTATAGAAGTGCTTATTGTAACTGCAAAAAAGTGGATCATCGAAGG
CATGGAAAGCGGCCACTTCCACTGGAAGCATCACCGGAGGAGAAAGAGAA
AGAACAAGACAACAACTTCCCTGCTTGGACTACTCATGAATCAGACATGT
CTGCCATGGTTTCCGCTCTTACACAAGTAATTGGCACCACTACCACCGAC
GCCGACGCCGACCCCTCGCCGGCAGCCGTTAAAGAAGAATCCTCCGATAA
CCCACTTCAACAAACTCAAACTCAAGATCAAGATCAAGAAGGTACAAGGA
GGAGACATTACAGAGGAGTAAGACAAAGACCTTGGGGCAAATGGGCAGCC
GAAATTAGAGACCCTAAAAAGGCAGCACGAGTATGGCTAGGTACATTTGA
GACTGC
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