CX292070

Overview
NameCX292070
Unique NameCX292070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8B_SCHPO (40S ribosomal protein S8-B OS=Schizosaccharomyces pombe GN=rps8b PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIG 431
            MGI+RDS H                 +ELGRQP+NT++   K +  +RVRGGN K+RALRLD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G
Sbjct:    1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8A_SCHPO (40S ribosomal protein S8-A OS=Schizosaccharomyces pombe GN=rps8a PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.498e-34
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIG 431
            MGI+RDS H                 +ELGRQP+NT++   K +  +RVRGGN K+RALRLD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G
Sbjct:    1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG 122          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 9.492e-34
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG  +G+
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGK 123          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.240e-33
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 434
            MGISRD+ H                 YE GR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGR 123          
BLAST of CX292070 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.208e-32
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 3
Query:   63 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 428
            MGI R  +H                  ELGR PANT+L + + V  +R RGGN K RALRLDTGN++W SEA+  + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+D+
Sbjct:    1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALRLDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDL 121          
The following BLAST results are available for this feature:
BLAST of CX292070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8B_SCHPO2.498e-3456.9140S ribosomal protein S8-B OS=Schizosaccharomyces ... [more]
RS8A_SCHPO2.498e-3456.9140S ribosomal protein S8-A OS=Schizosaccharomyces ... [more]
RS8_YEAST9.492e-3454.8440S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_XENLA1.240e-3356.4540S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_LEIMA5.208e-3254.9240S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC04010B07SK FlavFr1 Citrus clementina cDNA clone C04010B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292070 ID=CX292070; Name=CX292070; organism=Citrus clementina; type=EST; length=490bp
AAACGCTGAATCACCTATCAATCGCCCAGACAGAGAAACCCTAAGAATTT
CTCTCTGCGAAAATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGC
TACTGGGGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTG
GAAGGCAACCTGCAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGG
ATTAGGGTTCGTGGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACAC
AGGAAACTACTCCTGGGGAAGTGAAGCAGTGACTCGTAAGACCAGAATTC
TGGATGTGGTATACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACT
TTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTG
GTATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAG
CTGCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGAGGC
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