CX292081

Overview
NameCX292081
Unique NameCX292081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.358e-40
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            WAAQ   + RP  ++TS GLG MGFGLPAA+GA VA P+  +V I GDGSF+MNVQEL T+K ++LP+KI+LL+NQ LGMV QW+  F++   + T L D        P+ L  A A GI G  +TRK  + AA+ TML++ GPYLL V +   E+V P++P G +  +++
Sbjct:  381 WAAQHIAHTRPENFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTDN-------PDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            WAA FY++ +P   +TSGGLG MGFGLPAAIGA+VA P  I++DIDGD SF M   ELAT++   +P+KIL+LNN+  GMV QW++ FY+   +HT+  +        PN +K A+A GI   +V ++ DL   ++  L T GP L++V+V  +EHV P +P G A    I
Sbjct:  501 WAATFYRWTKPSSLVTSGGLGTMGFGLPAAIGASVAAPKDIVIDIDGDASFSMTGMELATVRQFDIPVKILILNNEEQGMVTQWQNLFYEKRYSHTHQKN--------PNFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQKEHVYPFVPGGKALHQFI 663          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.029e-36
Identity = 74/171 (43.27%), Postives = 110/171 (64.33%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            WAAQ + +R P  ++TSGGLG MG+GLPAAIGA VA P+++++DIDGD SF M + EL++      P+KIL+LNN+  GMV QW+  FY+   +HT+        ++ P+ +K AEA G+ G +V ++ +L A ++  + T GP LL+V V  +  VLPM+  G    + I
Sbjct:  503 WAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 665          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.521e-36
Identity = 78/174 (44.83%), Postives = 110/174 (63.22%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN-RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITE 520
            W AQ Y   RPRQWLTSGGLG MGFGLPAAIGAA+ANPD  ++   GDGS +MN+QE+AT    +L +KI+L+NN+ LG+V Q +  FY+    A TY G          N ++ A   G+    +  +AD +A++Q +++ PGP L+ V +  +E V PM+P G A  +++ E
Sbjct:  397 WTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGK--------INFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE 562          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 77/164 (46.95%), Postives = 104/164 (63.41%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQF K  + + WL+S GLG MG+GLPAAIGA +ANP+ +I+ I GD SF MN+QEL TI   +L IKI ++NNQ  GMV QW+  FY    AH+ +          P+ ++ A + GI G +VT   DL++ I+ ++ TPGP L+D IV   E+  PMI  G
Sbjct:  411 WAAQFLKVEQGK-WLSSSGLGTMGYGLPAAIGAKIANPNDLIICITGDASFQMNLQELGTIAQYELDIKIFIINNQWQGMVRQWQQAFYDQRYAHSNMAKGQ------PDFVQLANSYGIRGIRVTTSKDLKSKIERIISTPGPLLIDCIVATSENCYPMIAPG 567          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            W+AQF K +  + WL+S GLG MG+GLPAAIGA VA+P+ +++ I GD SF MN+QEL TI   +LP+KI+++NN+  GMV QW+  FY    +H      SR +E  P+  K AEA GI    +  + ++++A+Q  +D PGP LLD  V   E+  PM+  G
Sbjct:  409 WSAQFLKVKA-KHWLSSAGLGTMGYGLPAAIGAQVAHPNDVVICISGDSSFQMNMQELGTIAQYQLPVKIIIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPDFQKLAEAFGIKAFTINNRQNMQSALQVAIDYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG--PYLLDVIVPHQEHVLPMIPSGGAFKD 508
            WA Q+Y++  PR W++SGGLG MGFGLP+AIGA VA P+  ++DIDGD SF M   ELAT     + +K+LL NN+  GMV QW+D FY+   +HT + +        P+ +K +E+ G  G + T+  DL   ++  L+  G  P +L+ +V   EHV PMIP+G A  +
Sbjct:  545 WACQYYRWTEPRSWVSSGGLGTMGFGLPSAIGAKVAAPEKYVIDIDGDASFSMTAMELATASQYDIGVKVLLFNNEFQGMVEQWQDLFYENRYSHTRMTN--------PDFVKLSESMGAKGLRCTKLEDLPRMMKEFLEYDGKRPIVLECLV-SSEHVYPMIPAGKALHE 706          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 74/171 (43.27%), Postives = 106/171 (61.99%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG--PYLLDVIVPHQEHVLPMIPSGGAFKD 508
            WA Q+Y++  PR W++SGGLG MGFGLP+AIGA VA P+  ++DIDGD SF M   ELAT     + +K+LL NN+  GMV QW+D FY+   +HT + +        P+ +K +E+ G  G + T+  DL   ++  L+  G  P +L+ +V   EHV PMIP+G A  +
Sbjct:  545 WACQYYRWTEPRSWVSSGGLGTMGFGLPSAIGAKVAAPEKYVIDIDGDASFSMTAMELATASQYDIGVKVLLFNNEFQGMVEQWQDLFYENRYSHTRMTN--------PDFVKLSESMGTKGLRCTKLEDLPRMMKEFLEYDGKRPIVLECLV-SSEHVYPMIPAGKALHE 706          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 73/164 (44.51%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            W+AQF K +  + W++S GLG MG+GLPAAIGA VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  409 WSAQFLKVKS-KHWISSAGLGTMGYGLPAAIGAQVAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 73/164 (44.51%), Postives = 103/164 (62.80%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            W+AQF K +  + W++S GLG MG+GLPAAIGA VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  409 WSAQFLKVKS-KHWISSAGLGTMGYGLPAAIGAQVAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
The following BLAST results are available for this feature:
BLAST of CX292081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ILVG_ECOLI1.358e-4048.54Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_SCHPO3.951e-4046.78Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_YEAST2.029e-3643.27Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_ECOLI4.521e-3644.83Acetolactate synthase isozyme 1 large subunit OS=E... [more]
ILVB_CYACA3.827e-3546.95Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB_PORYE1.113e-3445.12Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_CRYNV1.454e-3443.27Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_CRYNE1.454e-3443.27Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_PORUM1.231e-3344.51Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU1.231e-3344.51Acetolactate synthase large subunit OS=Porphyra pu... [more]

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Properties
Property NameValue
Genbank descriptionC04010C06SK FlavFr1 Citrus clementina cDNA clone C04010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292081 ID=CX292081; Name=CX292081; organism=Citrus clementina; type=EST; length=618bp
GTGGGCTGCTCAGTTTTACAAGTACAGGAGACCTCGCCAGTGGCTAACAT
CTGGAGGACTAGGGGCTATGGGTTTTGGATTGCCCGCTGCAATCGGAGCT
GCTGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAG
TTTCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCC
CCATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAA
TGGGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGA
TCCATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAG
CCTGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCC
GCAATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCAT
CGTTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTT
TTAAAGATGTGATCACTGAAGGTGATGGAAGAACGCAGTATTAACGACAA
GCTGAAGCAGCATAGATGCCTTCTTGGCTATGTATTTATGTTCCTTTTGA
GTTGCAGGCTTAACTTAC
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