CX292081

Overview
NameCX292081
Unique NameCX292081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 68/171 (39.77%), Postives = 106/171 (61.99%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            W A F+K + PR +L SGGLG MGFG PAAIGA VA P A ++ I GDG F+MN QELATI    +P+ I + +N+ LGMV QW++ +Y   ++  +LG+        P+ +K AE+ G+   ++    +++  ++  + +  PYLLD+++   E  LPM+P GG   +++
Sbjct:  400 WMAHFFKTKMPRSFLASGGLGTMGFGFPAAIGAKVAKPYANVISITGDGGFLMNSQELATISEYDIPVVICIFDNRTLGMVYQWQNLYYGQRQSEVHLGES-------PDFVKLAESYGVKADRIISPDEIKEKLKEAILSNEPYLLDIVIDPAE-ALPMVPPGGRLTNIV 562          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_BACSU (Acetolactate synthase large subunit OS=Bacillus subtilis GN=ilvB PE=1 SV=4)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 68/171 (39.77%), Postives = 107/171 (62.57%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            W+AQFY +++  +W+TSGGLG MGFGLPAAIGA +A  DA +V + GDG F M +QEL  I+   LP+K+++LNN  LGMV QW++ FY+   + +            P+ +K +EA GI G +++ +A+ +  ++  L +  P ++DV V  +E V PM+  G    +++
Sbjct:  407 WSAQFYPFQKADKWVTSGGLGTMGFGLPAAIGAQLAEKDATVVAVVGDGGFQMTLQELDVIRELNLPVKVVILNNACLGMVRQWQEIFYEERYSESKFASQ-------PDFVKLSEAYGIKGIRISSEAEAKEKLEEALTSREPVVIDVRVASEEKVFPMVAPGKGLHEMV 570          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_MYCTU (Acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32
Identity = 74/165 (44.85%), Postives = 97/165 (58.79%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQF +Y +PR WL SGGLG MGF +PAA+GA +A P   +  IDGDG F M  QELAT  VE +P+K+ L+NN +LGMV QW+  FY    + T   D +  S   P+ +K AEA G  G +  R+ D+   I Q       P ++D IV     V PM+ +G
Sbjct:  433 WAAQFIRYEKPRSWLNSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAG 594          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_MYCBO (Acetolactate synthase OS=Mycobacterium bovis GN=ilvB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32
Identity = 74/165 (44.85%), Postives = 97/165 (58.79%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQF +Y +PR WL SGGLG MGF +PAA+GA +A P   +  IDGDG F M  QELAT  VE +P+K+ L+NN +LGMV QW+  FY    + T   D +  S   P+ +K AEA G  G +  R+ D+   I Q       P ++D IV     V PM+ +G
Sbjct:  433 WAAQFIRYEKPRSWLNSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAG 594          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_MYCLE (Acetolactate synthase OS=Mycobacterium leprae GN=ilvB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.823e-32
Identity = 74/171 (43.27%), Postives = 100/171 (58.48%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDV 511
            WAAQF  Y +PR WL SGGLG MGF +PAA+GA +A P+A +  IDGDG F M  QELAT  +E  PIK+ L+NN +LGMV QW+  FY+   + T   D +  S   P+ +K AEA G  G +   + D+   I Q       P ++D IV     V PM+ +G +  ++
Sbjct:  440 WAAQFISYEKPRTWLNSGGLGTMGFAIPAAMGAKIARPEAEVWAIDGDGCFQMTNQELATCAIEGAPIKVALINNGNLGMVRQWQALFYQERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCECEEDVVDVINQARAINNRPVVIDFIVGADAQVWPMVAAGASNDEI 607          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_GUITH (Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.152e-31
Identity = 72/164 (43.90%), Postives = 98/164 (59.76%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQF K  + R W+TS GLG MG+GLPAAIG  +A+P+  ++ I GD SF MN+QEL T+    LPIKI ++NN+  GMV QW+  FY    +H      S   +  PN  K AEA G+   ++  + DL+  I+  LD  GP L+D+ V   E+  PM+  G
Sbjct:  408 WAAQFIKTSQKR-WITSAGLGTMGYGLPAAIGVQIAHPNEQVICISGDASFQMNIQELGTVSQYGLPIKIFIINNKWQGMVRQWQQAFYGERYSH------SNMEKGAPNFTKVAEAFGLRSLKIKSRNDLKLRIKEALDYDGPILVDIQVIADENCYPMVAPG 564          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_CORGL (Acetolactate synthase large subunit OS=Corynebacterium glutamicum GN=ilvB PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.353e-31
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-TPGPYLLDVIVPHQEHVLPMIPSGGAFKDV 511
            WAAQF  + +PR WL SGGLG MG+ +PAA+GA    PD  +  IDGDG F M  QEL T  VE  PIKI L+NN +LGMV QW+  FY+   ++T L     + E  P+ +  +E  G    +VT+  ++  AIQ   +    P ++D IV     V PM+ +G +  D+
Sbjct:  420 WAAQFVDFEKPRTWLNSGGLGTMGYAVPAALGAKAGAPDKEVWAIDGDGCFQMTNQELTTAAVEGFPIKIALINNGNLGMVRQWQTLFYEGRYSNTKL---RNQGEYMPDFVTLSEGLGCVAIRVTKAEEVLPAIQKAREINDRPVVIDFIVGEDAQVWPMVSAGSSNSDI 587          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 68/180 (37.78%), Postives = 104/180 (57.78%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGR 532
            +AA +Y +++PR+W+ SGGLG MGFGLPAA+G  +A P+  ++ + GDGS  MN+QEL+T    +LPI IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    +L   +Q  L+         +D+ +   EHV PM    G   +++   +G+
Sbjct:  401 FAALYYSFQKPRRWINSGGLGTMGFGLPAALGVKLAFPNETVICVTGDGSIQMNIQELSTAMQYELPILILNLNNKSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHSGISINTPKELEKKLQLALEKLQNGHLVFVDIKIDASEHVYPMQIRDGGMNNMLLRKNGQ 573          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 73/165 (44.24%), Postives = 95/165 (57.58%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ-TMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQF  Y +PR WL SGG G MGF +PAA+GA +  P+A +  IDGDG F M  QELAT  VE +PIK+ L+NN +LGMV QW+  FY+   + T LG P       P+ +K AEA G  G +  R+ D+   I         P ++  IV     V PM+ +G
Sbjct:  436 WAAQFISYEKPRTWLNSGGQGTMGFAIPAAMGAKMGRPEAEVWAIDGDGCFQMTNQELATCAVEGIPIKVALINNGNLGMVRQWQTLFYEERYSQTDLGHPLAP---HPDFVKLAEALGCVGLRCEREEDVVDVINAARAINDRPVVIAFIVGADAQVWPMVAAG 597          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_SALTY (Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium GN=ilvI PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.664e-30
Identity = 70/181 (38.67%), Postives = 104/181 (57.46%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRT 535
            +AA +Y + +PR+W+ SGGLG MGFGLPAA+G  +A P  ++V + GDGS  MN+QEL+T    +LP+ +L LNN++LGMV QW+D  Y    + +Y+       +  P+ ++ AEA G  G Q+ R  +L + +   L+         +DV V   EHV PM   GG   ++      RT
Sbjct:  401 FAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPKEMVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGLQINRPDELESKLSEALEHVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574          
The following BLAST results are available for this feature:
BLAST of CX292081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ILVB_METJA3.582e-3339.77Probable acetolactate synthase large subunit OS=Me... [more]
ILVB_BACSU3.582e-3339.77Acetolactate synthase large subunit OS=Bacillus su... [more]
ILVB_MYCTU5.172e-3244.85Acetolactate synthase OS=Mycobacterium tuberculosi... [more]
ILVB_MYCBO5.172e-3244.85Acetolactate synthase OS=Mycobacterium bovis GN=il... [more]
ILVB_MYCLE8.823e-3243.27Acetolactate synthase OS=Mycobacterium leprae GN=i... [more]
ILVB_GUITH1.152e-3143.90Acetolactate synthase large subunit OS=Guillardia ... [more]
ILVB_CORGL3.353e-3141.52Acetolactate synthase large subunit OS=Corynebacte... [more]
ILVI_BUCSC7.469e-3137.78Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_MYCAV9.754e-3144.24Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVI_SALTY1.664e-3038.67Acetolactate synthase isozyme 3 large subunit OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC04010C06SK FlavFr1 Citrus clementina cDNA clone C04010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292081 ID=CX292081; Name=CX292081; organism=Citrus clementina; type=EST; length=618bp
GTGGGCTGCTCAGTTTTACAAGTACAGGAGACCTCGCCAGTGGCTAACAT
CTGGAGGACTAGGGGCTATGGGTTTTGGATTGCCCGCTGCAATCGGAGCT
GCTGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAG
TTTCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCC
CCATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAA
TGGGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGA
TCCATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAG
CCTGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCC
GCAATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCAT
CGTTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTT
TTAAAGATGTGATCACTGAAGGTGATGGAAGAACGCAGTATTAACGACAA
GCTGAAGCAGCATAGATGCCTTCTTGGCTATGTATTTATGTTCCTTTTGA
GTTGCAGGCTTAACTTAC
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