CX292081

Overview
NameCX292081
Unique NameCX292081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 67/164 (40.85%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            W AQ+Y Y+  RQ +TSGG+G MGFG+PAAIGA +A P+  ++   GDG F M  QELA +    + IK++L+NN  LGMV QW++ FY+  R+ +         ++ PN    AEA GI   ++     L   ++ + +   P L++V++   EHVLPMIP+G
Sbjct:  399 WVAQYYPYKNARQLITSGGMGTMGFGIPAAIGAKLAQPNKNVIVFVGDGGFQMTNQELALLNGYGIAIKVVLINNHSLGMVRQWQESFYEERRSQSVF-------DVEPNFQLLAEAYGIKHVKLDNPKTLADDLKIITEDE-PMLIEVLISKSEHVLPMIPAG 554          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.258e-30
Identity = 68/181 (37.57%), Postives = 104/181 (57.46%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRT 535
            +AA +Y + +PR+W+ SGGLG MGFGLPAA+G  +A P+  +V + GDGS  MN+QEL+T    +LP+ ++ LNN++LGMV QW+D  Y    + +Y+       +  P+ ++ AEA G  G Q++   +L + +   L+         +DV V   EHV PM   GG   ++      RT
Sbjct:  401 FAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_BUCBP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvI PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.409e-29
Identity = 70/169 (41.42%), Postives = 98/169 (57.99%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ---TMLDTPGPYLLDVIVPHQEHVLPM-IPSGG 496
            + A +Y + +PR+W+ SGGLG MG+GLPAA+G  +A P   ++ I GDGS  MN+QEL+T    KL I IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    DL   ++     LD      +D+ +  +EHV PM I SGG
Sbjct:  401 FTALYYSFNKPRRWVNSGGLGTMGYGLPAALGVKLALPKETVLCITGDGSIQMNIQELSTAMQYKLSILILNLNNRSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHIGISIHNPEDLEKKLKLALLKLDQGNLVFVDITIDPEEHVYPMQIRSGG 562          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP---YLLDVIVPHQEHVLPMIPSGGAFKDV 511
            + A +Y + +PR+W+ SGGLG MGFGLPAA+G  +A P   ++ I GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K +E+ G  G Q+T   +L   +   L          +DV + + EHV PM   GG   ++
Sbjct:  398 FTALYYPFNKPRRWINSGGLGTMGFGLPAALGVKLALPKETVICITGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLSESYGHFGIQITEPIELEEKLMLALSKLSDGHLVFVDVQIDNSEHVYPMQIQGGGMNEM 563          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_METAO (Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            W A ++K + PR +L+SGGLG MGFG P+AIGA VA PD+ ++ I GDG F+MN QEL TI    +P+ I + +N+ LGMV QW++ FY   +     G         P+ +K AE+ GI   ++    ++  A++  ++   PYLLD  +      L M+P G    ++I
Sbjct:  408 WMAHYFKTQTPRSFLSSGGLGTMGFGFPSAIGAKVAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVICIFDNRTLGMVYQWQNLFYGKRQCSVNFGGA-------PDFIKLAESYGIKARRIESPNEINEALKEAINCDEPYLLDFAI-DPSSALSMVPPGAKLTNII 570          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_HAEIN (Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.352e-29
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL-LDVIVPHQEHVLPMIPSGGAFKDVI 514
            +AA  Y +  PR W+ SGG G MGFG PAA+G  +A+P+  +V + GDGS  MN+QEL+T     +P+ I+ LNN  LGMV QW+D  Y    + TY+          P+  K AE+ G  G ++    +L + +Q         + +D+ V   EHV PM   GGA  ++I
Sbjct:  400 FAALHYPFDEPRHWINSGGAGTMGFGFPAALGVKLAHPEGTVVCVTGDGSIQMNIQELSTATQYGIPVVIICLNNHFLGMVKQWQDLIYSGRHSQTYMNS-------LPDFAKLAESYGHVGIKIATPDELESKLQEAFSIKNKLVFVDINVDESEHVYPMQIRGGAMNEMI 564          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI---QTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDV 511
            + A +Y++ +PR+W+ SGGLG MGFGLPAA+G  +A P A ++ + GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K  E+ G  G +V    +L   +      L       LD+ +   EHV PM   GG   ++
Sbjct:  398 FTALYYQFNKPRRWINSGGLGTMGFGLPAALGVKLALPKATVICVTGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLVESYGHIGLKVKTNEELEEKLILALKKLSEGNLVFLDIQIDDSEHVYPMQIQGGGMNEM 563          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_SYNPX (Acetolactate synthase large subunit OS=Synechococcus sp. (strain WH8102) GN=ilvB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 65/164 (39.63%), Postives = 95/164 (57.93%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 493
            WAAQ  +   PR W++S GLG MGFG+PAA+GA VA PD  +V I GD S +MN+QEL T+    LP+K++++NN   GMV QW++ FY    +       S      P+ +  A + G+ G ++T +  L   +   L +P P ++DV V   E+  PM+P G
Sbjct:  417 WAAQHLR-NGPRGWISSAGLGTMGFGMPAAMGAQVAMPDRQVVCIAGDASILMNIQELGTLAAYGLPVKVVIVNNHWQGMVRQWQESFYDERYS------ASDMLNGMPDFIALARSFGVDGVKITDRELLHRDLAAALQSPTPTMIDVHVRRGENCYPMVPPG 573          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVB_SPIPL (Acetolactate synthase (Fragment) OS=Spirulina platensis GN=ilvY PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.656e-28
Identity = 68/171 (39.77%), Postives = 94/171 (54.97%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 514
            WA QF +   PR+W+TSGGLG MG+GLPAA+G  VA+P   +  I GDGSF MN+QEL TI    + +K+++LNN  LGMV QW+  FY      T L D +      P   + A+  G+    V ++   +  +   L   GP +LDV V   E   PM+  G    D++
Sbjct:  412 WAGQFVQ-NGPRRWMTSGGLGTMGYGLPAAVGVKVAHPHDTVTCISGDGSFQMNMQELGTIAQYGIGVKVIILNNGWLGMVRQWQHMFYNDRYEATNLEDGT------PEFARLADVYGLEAMNVRQRKIYQRRLPKALSHKGPMILDVRVTRDEDCYPMVAPGHDNSDMM 575          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: POXB_ECOLI (Pyruvate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=poxB PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.237e-17
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLP 478
            WAA++ K    R+ L S   G+M   +P A+GA    P+  +V + GDG F M + +  ++   KLP+KI++ NN  LG V           +A  YL D +   +   N  + AEACGI G +V + +++  A+Q      GP L+DV+V  +E  +P
Sbjct:  386 WAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAM-------EMKAGGYLTDGTELHD--TNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP 535          
The following BLAST results are available for this feature:
BLAST of CX292081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ILVB_LACLA2.838e-3040.85Acetolactate synthase large subunit OS=Lactococcus... [more]
ILVI_ECOLI8.258e-3037.57Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVI_BUCBP1.409e-2941.42Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_BUCAI1.840e-2938.15Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_METAO1.840e-2938.01Probable acetolactate synthase large subunit OS=Me... [more]
ILVI_HAEIN5.352e-2937.79Acetolactate synthase large subunit OS=Haemophilus... [more]
ILVI_BUCAP9.130e-2937.57Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SYNPX2.034e-2839.63Acetolactate synthase large subunit OS=Synechococc... [more]
ILVB_SPIPL2.656e-2839.77Acetolactate synthase (Fragment) OS=Spirulina plat... [more]
POXB_ECOLI1.237e-1733.33Pyruvate dehydrogenase [cytochrome] OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionC04010C06SK FlavFr1 Citrus clementina cDNA clone C04010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292081 ID=CX292081; Name=CX292081; organism=Citrus clementina; type=EST; length=618bp
GTGGGCTGCTCAGTTTTACAAGTACAGGAGACCTCGCCAGTGGCTAACAT
CTGGAGGACTAGGGGCTATGGGTTTTGGATTGCCCGCTGCAATCGGAGCT
GCTGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAG
TTTCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCC
CCATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAA
TGGGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGA
TCCATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAG
CCTGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCC
GCAATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCAT
CGTTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTT
TTAAAGATGTGATCACTGAAGGTGATGGAAGAACGCAGTATTAACGACAA
GCTGAAGCAGCATAGATGCCTTCTTGGCTATGTATTTATGTTCCTTTTGA
GTTGCAGGCTTAACTTAC
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