CX292081

Overview
NameCX292081
Unique NameCX292081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: YDAP_BACSU (Putative thiamine pyrophosphate-containing protein ydaP OS=Bacillus subtilis GN=ydaP PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 52/166 (31.33%), Postives = 91/166 (54.82%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGA 499
            W A+ +K    + ++ S  L  MG GLP AI A+++ P+   + + GDG F M +Q+L T    KLPI +++LNN++LGM+ ++E +  K N  +      ++   +  +   FAE+CG  G +VT+  +L  A    L +  P ++DV++ ++  +   I  G A
Sbjct:  388 WMARHFKMNANQDFIVSSWLATMGCGLPGAIAASLSEPERQAIAVCGDGGFSMVMQDLPTAVKYKLPITVVILNNENLGMI-EYEQQ-VKGNIDYV-----TKLQNV--DYAAFAESCGAKGIKVTKAEELAPAFHEALHSDQPVVVDVMIGNEPPLPGKITYGQA 544          
BLAST of CX292081 vs. ExPASy Swiss-Prot
Match: ILVX_BACSU (Acetolactate synthase OS=Bacillus subtilis GN=alsS PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/157 (25.48%), Postives = 76/157 (48.41%), Query Frame = 2
Query:    2 WAAQFYKYRRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHV 472
            W +++++   P   + S G+  +G  LP AIGA++  P   +V + GDG F+ +  EL T    K PI  ++ N+    MV   + + Y    A  +            +++K+AE+ G  G +V     L   ++  ++  GP ++DV V + +++
Sbjct:  403 WMSRYFRSYEPLTLMISNGMQTLGVALPWAIGASLVKPGEKVVSVSGDGGFLFSAMELETAVRLKAPIVHIVWNDSTYDMVAFQQLKKYNRTSAVDFGN---------IDIVKYAESFGATGLRVESPDQLADVLRQGMNAEGPVIIDVPVDYSDNI 550          
The following BLAST results are available for this feature:
BLAST of CX292081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
YDAP_BACSU3.046e-1631.33Putative thiamine pyrophosphate-containing protein... [more]
ILVX_BACSU2.951e-1125.48Acetolactate synthase OS=Bacillus subtilis GN=alsS... [more]

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Properties
Property NameValue
Genbank descriptionC04010C06SK FlavFr1 Citrus clementina cDNA clone C04010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292081 ID=CX292081; Name=CX292081; organism=Citrus clementina; type=EST; length=618bp
GTGGGCTGCTCAGTTTTACAAGTACAGGAGACCTCGCCAGTGGCTAACAT
CTGGAGGACTAGGGGCTATGGGTTTTGGATTGCCCGCTGCAATCGGAGCT
GCTGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAG
TTTCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCC
CCATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAA
TGGGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGA
TCCATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAG
CCTGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCC
GCAATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCAT
CGTTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTT
TTAAAGATGTGATCACTGAAGGTGATGGAAGAACGCAGTATTAACGACAA
GCTGAAGCAGCATAGATGCCTTCTTGGCTATGTATTTATGTTCCTTTTGA
GTTGCAGGCTTAACTTAC
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