CX292087

Overview
NameCX292087
Unique NameCX292087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.694e-36
Identity = 76/126 (60.32%), Postives = 95/126 (75.40%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKVVKVSGVSL 422
            G+ AGR LK  ++ QRW+   YK+  LG + K  P  GS  A+GIVLEK+G+EAKQPNSA+RKC RVQLIKNGK I AF+P DG +N+I+E+DEV + G G  +G A+GDIPGVRFKV KV+G SL
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSL 132          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.296e-35
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            G+ AGRKL  +R+  RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKEL 132          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.296e-35
Identity = 75/131 (57.25%), Postives = 94/131 (71.76%), Query Frame = 3
Query:   45 TRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            T G  A RKLK  R+ +RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:    2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.214e-34
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            G+ AGRKL  +R+  RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKEL 132          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.214e-34
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            G+ AG KLK  R+  RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKVVKV+GVSL A++
Sbjct:    9 GLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIW 138          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.214e-34
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            G+ AG KLK  R+  RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A++
Sbjct:    9 GLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIW 138          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.214e-34
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 422
            G+ A +KLK +R+  RW D  YK+  LG   K  P  GS  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVTKVNNVAL 128          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.214e-34
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            G  A RKL+  R+  RW D+ YK+  L  +E   P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G  G KG A GDIPGVR+KVVKV+ V+L  L
Sbjct:    9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGDIPGVRYKVVKVNDVALSEL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.071e-34
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            G+ +   L   R+ +R AD +Y+K  LG ++K    G +  AK IVLEKIG+EAKQPNSAIRK  R QLI  GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIF 131          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.071e-34
Identity = 74/130 (56.92%), Postives = 98/130 (75.38%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 434
            G+ AG KLK  R+  +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GDIPGVRFKV+KV+GVSL A++
Sbjct:    9 GLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIW 138          
The following BLAST results are available for this feature:
BLAST of CX292087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_CENSY1.694e-3660.3230S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]
RS12_THEVO9.296e-3557.3630S ribosomal protein S12P OS=Thermoplasma volcani... [more]
RS12_HALSA9.296e-3557.2530S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_THEAC1.214e-3457.3630S ribosomal protein S12P OS=Thermoplasma acidoph... [more]
RS12_PYRCJ1.214e-3458.4630S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE1.214e-3457.6930S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_METST1.214e-3458.7330S ribosomal protein S12P OS=Methanosphaera stadt... [more]
RS12_METKA1.214e-3458.9130S ribosomal protein S12P OS=Methanopyrus kandler... [more]
RS23_ENCCU2.071e-3458.1440S ribosomal protein S23 OS=Encephalitozoon cunic... [more]
RS12_PYRIL2.071e-3456.9230S ribosomal protein S12P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionC04010D03SK FlavFr1 Citrus clementina cDNA clone C04010D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292087 ID=CX292087; Name=CX292087; organism=Citrus clementina; type=EST; length=564bp
GCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAGACACGT
GGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTG
GGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGAAGAAGC
CATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGT
ATTGAAGCTAAGCAGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCA
ACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTT
GCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGA
CGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAAGGTTGT
GAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGGAGA
AGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGAT
AGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTCTCGAGTGGATTTT
ATGAACAATTTTTT
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