CX292087

Overview
NameCX292087
Unique NameCX292087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.836e-29
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIREL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.955e-29
Identity = 67/127 (52.76%), Postives = 86/127 (67.72%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 422
            +G  A R L    +  RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVRF V  V+GVSL
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGDIPGVRFVVSGVNGVSL 129          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIREL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIREL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.300e-28
Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLREL 138          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.218e-28
Identity = 66/130 (50.77%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIREL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.437e-27
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   48 RGMGAGRKLKTHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 431
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMREL 137          
BLAST of CX292087 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.757e-25
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 3
Query:   51 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 422
            G+ AGRKLK  R+  RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPL 130          
The following BLAST results are available for this feature:
BLAST of CX292087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METM75.836e-2952.3130S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METLZ9.955e-2952.7630S ribosomal protein S12P OS=Methanocorpusculum l... [more]
RS12_METMP1.300e-2851.5430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM51.300e-2851.5430S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA1.300e-2851.9130S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_METVS2.218e-2850.7730S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_META31.437e-2750.0030S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_NANEQ1.757e-2551.5930S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC04010D03SK FlavFr1 Citrus clementina cDNA clone C04010D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292087 ID=CX292087; Name=CX292087; organism=Citrus clementina; type=EST; length=564bp
GCCTCGTAGCAGTCGAGTAACTACAATCAGGAATCATGGGGAAGACACGT
GGTATGGGAGCTGGTCGCAAGCTGAAGACTCACCGTAGGACTCAAAGGTG
GGCTGATAAGTCATACAAAAAGTCTCACCTCGGCAATGAGTGGAAGAAGC
CATTTGCTGGTTCTTCCCATGCTAAAGGAATTGTTCTTGAGAAGATAGGT
ATTGAAGCTAAGCAGCCTAACTCTGCTATTCGTAAGTGTGCTAGAGTTCA
ACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATGGTT
GCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTTGGA
CGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAAGGTTGT
GAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGGAGA
AGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTTGAT
AGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGTTCTCGAGTGGATTTT
ATGAACAATTTTTT
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