CX292096

Overview
NameCX292096
Unique NameCX292096
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 29/63 (46.03%), Postives = 35/63 (55.56%), Query Frame = 1
Query:   10 CPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            C  F   +YCC   N     C PT +S+ F+ +CP  YSY  DD  STFTC  G DY + FCP
Sbjct:  184 CLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.567e-11
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   10 CPVFKTDEYCCNSG-----NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            C  F   +YCC         C  T +S+ FK +CP  YSY  DD+TSTFTC    DY + FCP
Sbjct:  181 CTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          
BLAST of CX292096 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   10 CPVFKTDEYCCNSGN-----CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 183
            C  F T +YCC         C PT +S+ F + CPD YSY  DD   TFTC  G +Y + FCP
Sbjct:  183 CVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
The following BLAST results are available for this feature:
BLAST of CX292096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TP1A_MALDO2.567e-1146.03Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP1_CASSA2.567e-1144.44Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV9.753e-1144.44Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]

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Properties
Property NameValue
Genbank descriptionC04010D12SK FlavFr1 Citrus clementina cDNA clone C04010D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292096 ID=CX292096; Name=CX292096; organism=Citrus clementina; type=EST; length=416bp
AACGGGCCGTGCCCCGTGTTCAAGACCGACGAGTACTGTTGCAATTCAGG
CAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAAGGATAGGTGCCCGG
ATGTTTACAGTTACCCTAAGGATGACGCTACCAGCACATTTACTTGCCCG
ACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGAAGCATTTTTTTTCA
GGGGTAGAAATGGAAATAGAAAACTATACGACATAGCCTTCTATATCTGT
TATAATATTGGAATAAGGACCGTGTGGTCTTCACTGCCATAGAGCTGGAG
CAGGCACATGTAGTTATGTGCGTGTATGAACTATAATTTGTTCGTGAATT
AAAAGGAGAATAACTGAAATTTTATGGGGCTTCTTTAAAAAAACAAAAAA
AAAAAAATAAAAGTTT
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