CX292105

Overview
NameCX292105
Unique NameCX292105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_METPP (10 kDa chaperonin OS=Methylibium petroleiphilum (strain PM1) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + ++ K G +V++ KY+G  ++ +G   L++RE+D+  ++E
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFIALNCKVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVVE 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_COLP3 (10 kDa chaperonin OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 541
            SI+PL DRV+VK K VE K+ GGI L  +A  K   GEV+AVG G+ +   ++  + VK G QVI+S+  G + E  +G   LIL E D++ I+E
Sbjct:    2 SIRPLHDRVIVKRKKVESKSAGGIVLTGSAAEKSTRGEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_WOLPP (10 kDa chaperonin OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.161e-12
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEG-KTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            ++  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+G G +     ++ ++VK G +V Y ++AGTE+E +   +++++E D++ +++
Sbjct:    5 NLNVLDDNVL--IKPITEEKQGGIVLPSSAEKKPTKGEVIAIGSGSRNSSGERIALTVKTGDKVFYRQWAGTEVEHDNEKYVVMKESDLLAVIK 96          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_VESOH (10 kDa chaperonin OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKT-KLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +I+PL DRV+V+    ++ T  G+ +P +A  KP  G VVAVG GK    G T  LD+++  G +V++++YAGTE++ +G   LI++E D+V +++
Sbjct:    2 NIRPLHDRVVVRRVEEKKTTSSGLIIPDSATEKPSEGVVVAVGNGKKNDNGDTIALDVTI--GNKVLFAQYAGTEIKVDGKKLLIMKEGDIVAVIK 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_THEAB (10 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  272 PLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            PLG R+L+K    E++T+GGI LP TA+ KP   E+VAVG  +       D+ +  G +VI+SKY+GTE++    +++I+  +D++  +E
Sbjct:    5 PLGSRLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEIVAVGNLEDA-----DVDLHVGDKVIFSKYSGTEIKIEEEDYIIIDVEDILAKIE 89          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CHLTB (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            IKPLGDR+LVK +       GGI LP TA+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL   G  ++I++  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CHLT2 (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            IKPLGDR+LVK +       GGI LP TA+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL   G  ++I++  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_VEREI (10 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ +    L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVHRDELLVMKEDDLFAVVE 95          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_STAEP (10 kDa chaperonin OS=Staphylococcus epidermidis GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 33/93 (35.48%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +KPLG+RV+++ K  E+    GI L  +A+ K   G ++AVG+G+ +   T++   V  G  +++ +YAGTE++     +LIL E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQAAKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGAQTYLILNEEDILAIIE 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_PSEMY (10 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 35/94 (37.23%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 541
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG GK +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNQGEVVAVGTGKVLENGEVRPLAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGENEILAVIE 96          
The following BLAST results are available for this feature:
BLAST of CX292105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 497
Match NameE-valueIdentityDescription
CH10_METPP2.421e-1239.7810 kDa chaperonin OS=Methylibium petroleiphilum (s... [more]
CH10_COLP32.421e-1245.2610 kDa chaperonin OS=Colwellia psychrerythraea (st... [more]
CH10_WOLPP3.161e-1236.1710 kDa chaperonin OS=Wolbachia pipientis subsp. Cu... [more]
CH10_VESOH4.129e-1239.5810 kDa chaperonin OS=Vesicomyosocius okutanii subs... [more]
CH10_THEAB4.129e-1238.8910 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH10_CHLTB4.129e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_CHLT24.129e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_VEREI7.043e-1239.3610 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH10_STAEP7.043e-1235.4810 kDa chaperonin OS=Staphylococcus epidermidis GN... [more]
CH10_PSEMY7.043e-1237.2310 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]

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Properties
Property NameValue
Genbank descriptionC04010E09SK FlavFr1 Citrus clementina cDNA clone C04010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292105 ID=CX292105; Name=CX292105; organism=Citrus clementina; type=EST; length=587bp
TAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATC
AGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAG
CTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGA
TGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCA
GCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCT
CCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAAT
CAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAG
CTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAG
ACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGT
CATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATC
ATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAA
ATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCA
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