CX292105

Overview
NameCX292105
Unique NameCX292105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_PSEPF (10 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf0-1) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLILREDDVVGILE 541
            ++PL DRV+++    E+KT GGI LP +A  K   GE++AVG GK +   ++  +SVK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEEKKTAGGIVLPGSAAEKANHGEILAVGPGKALESGEVRALSVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_MACCJ (10 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 32/93 (34.41%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +KP G+RV+++    E  T  GI L  +A+ K   G VVAVG G+ +    +++I V  G +V+Y  + GTE++    ++++L+E+D++ I+E
Sbjct:    2 LKPYGNRVVIQKTERETTTASGIVLTDSAKEKTNEGTVVAVGTGRILNNGERVEIGVSVGDRVVYEPFGGTEVKTGDESYIVLKEEDIIAIVE 94          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CHRSD (10 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 541
            I+PL DRV+V+    E+KT GGI LP  AQ KP  GEV+AVG G+ +   ++  + VK G  VI+    G E +  +G   LI+ E D++ + E
Sbjct:    3 IRPLHDRVVVRRVEEEQKTAGGIVLPGNAQEKPTRGEVLAVGNGRILESGEVRPLDVKVGDTVIFKDGFGVEKQKIDGEEVLIMSESDILAVAE 96          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CAMJR (10 kDa chaperonin OS=Campylobacter jejuni (strain RM1221) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++ +   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CAMJJ (10 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++ +   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CAMJE (10 kDa chaperonin OS=Campylobacter jejuni GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++ +   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_CAMJ8 (10 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=groS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  263 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            + +PLG RVLVK     + T  GI +P  A+ KP  GEVVAV +  T         +  G +++++KY GTE++ +   +L+L  DD++GIL+
Sbjct:    2 NFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVSKEIT--------DIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK 86          
The following BLAST results are available for this feature:
BLAST of CX292105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 497
Match NameE-valueIdentityDescription
CH10_PSEPF5.962e-1135.1110 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH10_MACCJ5.962e-1134.4110 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH10_CHRSD7.787e-1141.4910 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH10_CAMJR7.787e-1137.6310 kDa chaperonin OS=Campylobacter jejuni (strain ... [more]
CH10_CAMJJ7.787e-1137.6310 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]
CH10_CAMJE7.787e-1137.6310 kDa chaperonin OS=Campylobacter jejuni GN=groS ... [more]
CH10_CAMJ87.787e-1137.6310 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC04010E09SK FlavFr1 Citrus clementina cDNA clone C04010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292105 ID=CX292105; Name=CX292105; organism=Citrus clementina; type=EST; length=587bp
TAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATC
AGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAG
CTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGA
TGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCA
GCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCT
CCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAAT
CAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAG
CTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAG
ACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGT
CATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATC
ATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAA
ATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCA
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