CX292105

Overview
NameCX292105
Unique NameCX292105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACC7 (10 kDa chaperonin OS=Bacillus cereus (strain AH187) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACC3 (10 kDa chaperonin OS=Bacillus cereus (strain 03BB102) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACC1 (10 kDa chaperonin OS=Bacillus cereus (strain ATCC 10987) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACC0 (10 kDa chaperonin OS=Bacillus cereus (strain AH820) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACAN (10 kDa chaperonin OS=Bacillus anthracis GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACAC (10 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_BACAA (10 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 538
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 49/92 (53.26%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 541
            +KPLGDRVLVK   VE KT GGI +P TAQ K Q G VVAVG+     K K+ +SV  G +VI+ KYAGT+++ +G +HLIL+ +D+V ++E
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGD----DKEKIKVSV--GQKVIHDKYAGTQIQIDGVDHLILKSNDLVAVVE 88          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 535
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          
BLAST of CX292105 vs. ExPASy Swiss-Prot
Match: CH10_LACHE (10 kDa chaperonin OS=Lactobacillus helveticus GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.769e-19
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  266 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 535
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
The following BLAST results are available for this feature:
BLAST of CX292105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 497
Match NameE-valueIdentityDescription
CH10_BACC75.948e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain AH187... [more]
CH10_BACC35.948e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain 03BB1... [more]
CH10_BACC15.948e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH10_BACC05.948e-1946.7410 kDa chaperonin OS=Bacillus cereus (strain AH820... [more]
CH10_BACAN5.948e-1946.7410 kDa chaperonin OS=Bacillus anthracis GN=groS PE... [more]
CH10_BACAC5.948e-1946.7410 kDa chaperonin OS=Bacillus anthracis (strain CD... [more]
CH10_BACAA5.948e-1946.7410 kDa chaperonin OS=Bacillus anthracis (strain A0... [more]
CH10_TREDE7.769e-1953.2610 kDa chaperonin OS=Treponema denticola GN=groS P... [more]
CH10_LISW67.769e-1948.3510 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_LACHE7.769e-1950.5510 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC04010E09SK FlavFr1 Citrus clementina cDNA clone C04010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292105 ID=CX292105; Name=CX292105; organism=Citrus clementina; type=EST; length=587bp
TAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATC
AGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAG
CTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGA
TGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCA
GCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCT
CCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAAT
CAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAG
CTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAG
ACAGTTGGGAAGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGT
CATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATC
ATCTCATATTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAA
ATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCA
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