CX292135

Overview
NameCX292135
Unique NameCX292135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4978_ORYSJ (UPF0497 membrane protein Os07g0442900 OS=Oryza sativa subsp. japonica GN=Os07g0442900 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.673e-27
Identity = 64/145 (44.14%), Postives = 87/145 (60.00%), Query Frame = 3
Query:   72 GIDVGLRVLLFAATLVSVIVMATAKQTELVT----PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSAT 494
            G ++ LR LLFA +L +++V+ TAKQT +V     PP   I   V AK+T SPA IY +AAL   C YS+IT ++S+ ++S  A + + L Y    DV                 ++GLKGN H+RW KICNVY K+CRHIGS+T
Sbjct:   38 GANLALRALLFAVSLSALVVLVTAKQTVMVPFVIRPPQF-ILAPVPAKYTHSPALIYLLAALCATCFYSLITAISSVRLLSSSACSAKTLFYLILLDVFYAAVMASATGTAGAVAWVGLKGNSHTRWNKICNVYGKFCRHIGSST 181          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4974_MAIZE (UPF0497 membrane protein 4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   24 APAKYEDQRAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            AP+      A   +  G D+ LRVLLFA TL  ++V+ATA+QT  V  P IP + +S+ AKF DSPA IY + AL V C YS+++   +   +   +S  R L     +DV                 +IGLKGN H+ W KICN+Y K+CRHIGS+
Sbjct:   19 APSPPAAAAAACRSLSGADLALRVLLFAVTLSGLVVLATAEQTVRVPVPQIPGLVLSLPAKFKDSPALIYLLVALCVTCFYSLLSTAFTSLKLLFGSSPSRTLFLLVLFDVFYAAIMASATGSAGGVAWIGLKGNSHTNWNKICNIYGKFCRHIGSS 175          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4971_PICSI (UPF0497 membrane protein 1 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.677e-19
Identity = 47/139 (33.81%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   63 NYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRH 479
            ++F +D  LR+L+  +T  + IVM T KQT +     +PI   + AK+  SPAF++FV A +VAC Y++++++   S+  K  S    +   +  D+VM+              Y+G KGN H++W K+C +YD++C H
Sbjct:   36 SFFVVDFSLRLLVIGSTFTAAIVMGTNKQTAI-----LPIVGPLSAKYQYSPAFVFFVIANAVACGYTLLSLI--FSITGKFTSTPLSVFLLSVTDLVMVALVSAGVSAAAAIAYVGYKGNSHTQWGKVCGIYDRFCHH 167          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497B_SOYBN (UPF0497 membrane protein 11 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   78 DVGLRVLLFAATLVSVIVMATAKQTELV----TPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            D+ LR+L F  TLV+ IV+A  KQT+LV    +    P+ V + AK+    AF+YF+   ++AC Y+ +++L  L++V++  S K L    A  D  M+               +G KGN H  W K+CNV+ K+C  + ++ GV
Sbjct:   24 DLLLRLLAFTVTLVAAIVIAVDKQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFVYFLVTNAIACTYAAMSLL--LALVNRGKS-KGLWTLIAVLDTFMVALLFSGNGAAAAVGILGYKGNSHVNWNKVCNVFGKFCDQMAASIGV 165          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497A_SOYBN (UPF0497 membrane protein 10 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   78 DVGLRVLLFAATLVSVIVMATAKQTELV----TPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            D+ LR+L F  TLV+ IV+A  KQT++V    +    P+ V + AK+    A +YF+   ++AC Y+++++L  L++V++  S K L    A  D  M+               +G KGN H  W K+CNV+ K+C  + ++ GV
Sbjct:   23 DLLLRLLAFTVTLVAAIVIAVDKQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTNAIACTYAVLSLL--LALVNRGKS-KGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWNKVCNVFGKFCDQMAASIGV 164          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4974_VITVI (UPF0497 membrane protein 4 OS=Vitis vinifera GN=GSVIVT00019813001 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   78 DVGLRVLLFAATLVSVIVMATAKQTELVT----PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            D+ LRV+  A TLV+ +++   KQT++V+    P   P+ V V AK+    AF+YFV + ++AC Y+ +++L S   V      K L L     D+VM+               +G +GN   RW K+CNV+ K+C  +  A G+
Sbjct:   31 DLVLRVVALALTLVAAVLLGVDKQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFVYFVVSNAIACSYAALSLLLS---VGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGAIGLMGYEGNSRVRWGKVCNVFGKFCNQVAVALGL 172          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497R_ARATH (UPF0497 membrane protein At4g15630 OS=Arabidopsis thaliana GN=At4g15630 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   72 GIDVGLRVLLFAATLVSVIVMATAKQTELVT----PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSATGV 500
            G+++ +RVL    T+V+  V+  AKQT++V     P   P+ VS  AK +   AF+Y ++A ++AC Y+ I+++  + ++SK   +K LL+     D++M+               +G  GN H  W K+C V+ K+C     +  +
Sbjct:   26 GLELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSAFVYNISANAIACGYTAISIV--IVMISKGKRSKSLLMAVLIGDLMMVALLFSSTGAAGAIGLMGRHGNKHVMWKKVCGVFGKFCNQAAVSVAI 170          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4975_MAIZE (UPF0497 membrane protein 5 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 47/144 (32.64%), Postives = 70/144 (48.61%), Query Frame = 3
Query:   72 GIDVGLRVLLFAATLVSVIVMATAKQTEL----VTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            G  V LRV + AATLVS +VM   +QT      VT    P+ V + A ++ S AF+YFV A ++ CL+S   + A  S        +  ++     D++ L               +G +GN H RW K+CNVY ++C    +A
Sbjct:   56 GCSVALRVFVLAATLVSAVVMGVDRQTSTIRITVTDALPPLEVPLTANWSYSSAFVYFVVANAMVCLFSAAALAACRS--------RAAMVPVMVGDLLALALLYSAVGAAAEFGILGERGNSHVRWPKVCNVYGRFCERAMAA 191          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4973_SORBI (UPF0497 membrane protein Sb03g014480 OS=Sorghum bicolor GN=Sb03g014480 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 46/146 (31.51%), Postives = 71/146 (48.63%), Query Frame = 3
Query:   48 RAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELV----TPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYC 473
            RA +    G  V LRV + A+TLVS +VM   +QT  +    T    P+ V + A ++ S AF+YFV A ++ CL+S   + A  S        +  ++     D++ L               +G +GN H RW K+CNVY ++C
Sbjct:   50 RAAQAPVDGCSVALRVFVVASTLVSAVVMGVDRQTRTIQITITDALPPLEVPLTANWSYSSAFVYFVVANAMVCLFSAAALAACRS--------RAAMVPVMVGDLLALALLYSAVGAAAEFGILGERGNSHVRWAKVCNVYGRFC 187          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497Q_ARATH (UPF0497 membrane protein At4g15620 OS=Arabidopsis thaliana GN=At4g15620 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 40/138 (28.99%), Postives = 76/138 (55.07%), Query Frame = 3
Query:   72 GIDVGLRVLLFAATLVSVIVMATAKQTELVT----PPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYC 473
            G+++ +RVL    T+ +  V+  AKQT++V+    P   P+ ++  AK +   AF+Y ++  ++AC Y+ I++  ++ ++S+   +K+LL+     D+VM+               +GL GN H  W K+C V+ K+C
Sbjct:   26 GVELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLDITTTAKASYLSAFVYNISVNAIACGYTAISI--AILMISRGRRSKKLLMVVLLGDLVMVALLFSGTGAASAIGLMGLHGNKHVMWKKVCGVFGKFC 161          
The following BLAST results are available for this feature:
BLAST of CX292135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
U4978_ORYSJ1.673e-2744.14UPF0497 membrane protein Os07g0442900 OS=Oryza sat... [more]
U4974_MAIZE3.156e-2641.40UPF0497 membrane protein 4 OS=Zea mays PE=2 SV=1[more]
U4971_PICSI1.677e-1933.81UPF0497 membrane protein 1 OS=Picea sitchensis PE=... [more]
U497B_SOYBN3.866e-1634.48UPF0497 membrane protein 11 OS=Glycine max PE=2 SV... [more]
U497A_SOYBN2.506e-1533.10UPF0497 membrane protein 10 OS=Glycine max PE=2 SV... [more]
U4974_VITVI3.273e-1533.10UPF0497 membrane protein 4 OS=Vitis vinifera GN=GS... [more]
U497R_ARATH6.173e-1429.25UPF0497 membrane protein At4g15630 OS=Arabidopsis ... [more]
U4975_MAIZE6.173e-1432.64UPF0497 membrane protein 5 OS=Zea mays PE=2 SV=1[more]
U4973_SORBI1.053e-1331.51UPF0497 membrane protein Sb03g014480 OS=Sorghum bi... [more]
U497Q_ARATH1.375e-1328.99UPF0497 membrane protein At4g15620 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC04010H11SK FlavFr1 Citrus clementina cDNA clone C04010H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292135 ID=CX292135; Name=CX292135; organism=Citrus clementina; type=EST; length=605bp
AAACACATACTATGGCGTCTGAAGCTCCAGCGAAATATGAAGATCAAAGG
GCGGTGCGCGAAAACTATTTTGGCATCGATGTGGGTCTTAGAGTATTGCT
GTTTGCAGCAACGCTCGTTTCCGTAATCGTCATGGCTACCGCCAAGCAAA
CTGAGCTCGTAACCCCACCTGGGATTCCTATTAGAGTCAGCGTTAAAGCC
AAGTTTACCGATTCCCCGGCTTTCATATATTTTGTCGCGGCACTATCGGT
TGCTTGCCTATACAGTATCATCACAATGCTTGCATCACTTTCGGTGGTCT
CCAAGCCAGCTTCCGCAAAACGGCTGCTGCTCTATTTCGCATTCTGGGAC
GTGGTGATGTTGGGGATCGTAGCATCGGCAACTGGGGCATCGGGAGGGGT
GGCGTATATCGGATTAAAGGGCAACGACCACTCGAGATGGACAAAGATAT
GCAACGTTTACGACAAGTACTGCAGACATATAGGCAGCGCCACCGGGGTC
TCACTCCTCGCCGCTGTTCTTCTCGTGCTACTCTCCATGCTCTCCTCTTA
CTCCCTTTACTTGCGCATTCGTGATTGATCAGATCATTATTTAGATTATG
TATCT
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