CX292135

Overview
NameCX292135
Unique NameCX292135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497E_SORBI (UPF0497 membrane protein Sb06g018970 OS=Sorghum bicolor GN=Sb06g018970 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 49/142 (34.51%), Postives = 71/142 (50.00%), Query Frame = 3
Query:   78 DVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKP-ASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI-GSATG 497
            DV LR L   AT+ S I M T  +T     P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P A   RL+L   F+D VML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:   34 DVFLRFLSIVATIASAISMGTTNETL----PFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHIIRPRARYSRLIL--VFFDAVMLALLTAGASAAAAIVYLAHKGNVRANWFAICQQFDSFCERISGSLIG 169          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4975_VITVI (UPF0497 membrane protein 5 OS=Vitis vinifera GN=GSVIVT00035198001 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 43/139 (30.94%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   87 LRVLLFAATLVSVIVMATAKQTELVTPPGI---PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRL-LLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            LRV+ F AT  + IVM   ++T+ +    I   PIR ++KAKF  +PAF++FV A  +A +Y+++  +  + V  +    K L L+  +  D+V++               +G  GN H++W KIC+ ++ +C   G A
Sbjct:   33 LRVVAFLATASATIVMGLNQETKTLLVGTIGTTPIRATLKAKFQHTPAFVFFVVANGLASVYNLV--MLGVDVFGRKLDCKGLRLVIISILDMVIVAVVAAGASSAAFMAELGKNGNSHAKWNKICDKFESFCHQGGGA 169          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4971_ORYSJ (UPF0497 membrane protein Os04g0460400 OS=Oryza sativa subsp. japonica GN=Os04g0460400 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 47/163 (28.83%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   12 MASEAPAKYEDQRAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI-GSATG 497
            ++S+AP        V      +D  LR +    T+ S I M T  +T     P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P  A+   L+  F+D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:    6 ISSKAPLVAPVAAGVNRAVAVVDTFLRFIAIIGTIGSAIAMGTTNETL----PFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRP-RARYSRLFLVFFDTAMLALLTAGASAAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIG 163          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4971_ORYSI (UPF0497 membrane protein 1 OS=Oryza sativa subsp. indica GN=H0219H12.8 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 47/163 (28.83%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   12 MASEAPAKYEDQRAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI-GSATG 497
            ++S+AP        V      +D  LR +    T+ S I M T  +T     P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P  A+   L+  F+D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:    6 ISSKAPLVAPVAAGVNRAVAVVDTFLRFIAIIGTIGSAIAMGTTNETL----PFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRP-RARYSRLFLVFFDTAMLALLTAGASAAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIG 163          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497T_ARATH (UPF0497 membrane protein At4g20390 OS=Arabidopsis thaliana GN=At4g20390 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 41/137 (29.93%), Postives = 73/137 (53.28%), Query Frame = 3
Query:   81 VGLRVLLFAATLVSVIVMATAKQTE---LVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRL-LLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRH 479
            +GLR+  F ATL + IVM+  K+T+   + T   +PI+ ++ AKF  +PAF++FV A  +   ++++ ++  + + S+    K L LL  A  D++                 +G  GN H++W K+C+ +  YC H
Sbjct:   20 LGLRIFAFMATLAAAIVMSLNKETKTLVVATIGTVPIKATLTAKFQHTPAFVFFVIANVMVSFHNLLMIV--VQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVFVAELGKNGNKHAKWNKVCDRFTTYCDH 154          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497C_RICCO (UPF0497 membrane protein 12 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   45 QRAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELV----TPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            +R  R N F +   LRVL F  T  + IV     QTE V    T    P+ V V AK+    AF++FV + ++AC Y+ I+++ S          K ++      D++M+               +G KGN H +W K+CNV+ K+C  + ++
Sbjct:   22 ERGGRTNSFLV---LRVLAFVLTSTAAIVHGVNNQTETVPIQLTSSMPPLYVPVVAKWHYLSAFVFFVVSNAIACSYAAISVMLSF------CGKKSMVPIILTLDLLMVALLFSSNGAATAIGVMGYKGNSHVKWNKVCNVFGKFCNQVAAS 165          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4978_VITVI (UPF0497 membrane protein 8 OS=Vitis vinifera GN=GSVIVT00018013001 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 41/139 (29.50%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   66 YFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI 482
            + G  + LR+L   ATL +  +M T+KQT  V        + V+AK++ S AF +F  A ++AC  S++T+  + S+  + ++  +    F   D+ M+              Y+G  GN+H+ W  IC+ +D+YC  I
Sbjct:   20 FLGAHICLRILTVTATLTAAWMMITSKQTVEV------YGIQVEAKYSYSSAFKFFSYANAIACGCSVLTLFPAFSLFYRGSTPMKFFFLFLH-DLCMMSLVLAGCAAATAIGYVGRYGNNHAGWMAICDQFDEYCNRI 151          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4976_VITVI (UPF0497 membrane protein 6 OS=Vitis vinifera GN=GSVIVT00023588001 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 39/136 (28.68%), Postives = 70/136 (51.47%), Query Frame = 3
Query:   87 LRVLLFAATLVSVIVMATAKQTELVTPPGIP----IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI 482
            LR+L    TL++ +V    KQT+++    I     + V V AK++D  AF+Y V + ++AC Y+ I+++  ++++ +     R+L      D+ M+               +G  GN H  W K+CNV+D +C H+
Sbjct:   37 LRILGLLLTLIAAVVAGVDKQTKIIPLTLIKTLPSLHVPVTAKWSDMSAFVYLVVSNAIACSYAAISLVL-VTMLGRRGKGGRVLAVIVL-DLHMVGLLFSANGAATAVGVLGQYGNSHVEWKKVCNVFDSFCHHL 170          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U49B7_ARATH (UPF0497 membrane protein At5g44550 OS=Arabidopsis thaliana GN=At5g44550 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 45/136 (33.09%), Postives = 71/136 (52.21%), Query Frame = 3
Query:   81 VGLRVLLFAATLVSVIVMATAKQTE--LVTPPG-IPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRH 479
            +GLR+L F+ATL + IVM   K+T+  +V   G  PI+ +  AKF  +PAF++FV A ++   ++++ M+A      K       LL  A  D++ +               +G  GN H+RW KIC+ +  YC H
Sbjct:   20 LGLRLLAFSATLSAAIVMGLNKETKTFIVGKVGNTPIQATFTAKFDHTPAFVFFVVANAMVSFHNLL-MIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAANAAAFMAEVGKNGNKHARWDKICDRFATYCDH 154          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4974_ORYSJ (UPF0497 membrane protein Os06g0231050 OS=Oryza sativa subsp. japonica GN=Os06g0231050 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 52/166 (31.33%), Postives = 74/166 (44.58%), Query Frame = 3
Query:    6 HTMASEAPAKYEDQRAVRENYFGIDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITM-LASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI-GSATG 497
            H   S+AP      R V +    +DV LR +    TL S I M T  QT     P     +  KA+++D P   +FV A S+   Y I+++ L+ + V+   A   RL+L F  +D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:    7 HGETSKAPLS----RGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTL----PFFTQFIRFKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIF--FDAAMLALVTAGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIG 162          
The following BLAST results are available for this feature:
BLAST of CX292135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
U497E_SORBI3.064e-1334.51UPF0497 membrane protein Sb06g018970 OS=Sorghum bi... [more]
U4975_VITVI3.064e-1330.94UPF0497 membrane protein 5 OS=Vitis vinifera GN=GS... [more]
U4971_ORYSJ1.164e-1228.83UPF0497 membrane protein Os04g0460400 OS=Oryza sat... [more]
U4971_ORYSI1.164e-1228.83UPF0497 membrane protein 1 OS=Oryza sativa subsp. ... [more]
U497T_ARATH1.520e-1229.93UPF0497 membrane protein At4g20390 OS=Arabidopsis ... [more]
U497C_RICCO2.593e-1230.07UPF0497 membrane protein 12 OS=Ricinus communis GN... [more]
U4978_VITVI2.593e-1229.50UPF0497 membrane protein 8 OS=Vitis vinifera GN=GS... [more]
U4976_VITVI5.778e-1228.68UPF0497 membrane protein 6 OS=Vitis vinifera GN=GS... [more]
U49B7_ARATH9.855e-1233.09UPF0497 membrane protein At5g44550 OS=Arabidopsis ... [more]
U4974_ORYSJ9.855e-1231.33UPF0497 membrane protein Os06g0231050 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC04010H11SK FlavFr1 Citrus clementina cDNA clone C04010H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292135 ID=CX292135; Name=CX292135; organism=Citrus clementina; type=EST; length=605bp
AAACACATACTATGGCGTCTGAAGCTCCAGCGAAATATGAAGATCAAAGG
GCGGTGCGCGAAAACTATTTTGGCATCGATGTGGGTCTTAGAGTATTGCT
GTTTGCAGCAACGCTCGTTTCCGTAATCGTCATGGCTACCGCCAAGCAAA
CTGAGCTCGTAACCCCACCTGGGATTCCTATTAGAGTCAGCGTTAAAGCC
AAGTTTACCGATTCCCCGGCTTTCATATATTTTGTCGCGGCACTATCGGT
TGCTTGCCTATACAGTATCATCACAATGCTTGCATCACTTTCGGTGGTCT
CCAAGCCAGCTTCCGCAAAACGGCTGCTGCTCTATTTCGCATTCTGGGAC
GTGGTGATGTTGGGGATCGTAGCATCGGCAACTGGGGCATCGGGAGGGGT
GGCGTATATCGGATTAAAGGGCAACGACCACTCGAGATGGACAAAGATAT
GCAACGTTTACGACAAGTACTGCAGACATATAGGCAGCGCCACCGGGGTC
TCACTCCTCGCCGCTGTTCTTCTCGTGCTACTCTCCATGCTCTCCTCTTA
CTCCCTTTACTTGCGCATTCGTGATTGATCAGATCATTATTTAGATTATG
TATCT
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