CX292135

Overview
NameCX292135
Unique NameCX292135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497E_SOYBN (UPF0497 membrane protein 14 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.681e-11
Identity = 43/141 (30.50%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   81 VGLRVLLFAATLVSVIVMATAKQTELVTPPGI---PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLL-YFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            + LRV+ F AT  + +VMA  KQT+ +    I   P+ +++ A F  +PAFI+FV   ++A  Y+++ +   + ++      K L L   A  DV+ +               +G  GN H+RW KIC+ ++ YC   G A
Sbjct:   28 LSLRVVAFFATASATLVMAFNKQTKGMVVATIGTNPVTITLTAMFQHTPAFIFFVIVNAIASFYNLLVI--GVEILGPQYDYKGLRLGLIAILDVMTMALAATGDGAATFMAELGRNGNSHARWDKICDKFEAYCNRGGVA 166          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497L_SORBI (UPF0497 membrane protein Sb10g008220 OS=Sorghum bicolor GN=Sb10g008220 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.195e-11
Identity = 45/143 (31.47%), Postives = 66/143 (46.15%), Query Frame = 3
Query:   75 IDVGLRVLLFAATLVSVIVMATAKQTELVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITM-LASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHI-GSATG 497
            +D+ LR +    TL S I M T  +T     P     +  KA+++D P   +FV A S+ C Y I+++ L+ + ++   A   RLLL F   D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:   28 LDLILRFIAIIGTLASAIAMGTTNETL----PFFTQFIRFKAQYSDLPTLTFFVVANSIVCAYLILSLPLSIVHIIRSRAKYSRLLLIFL--DAAMLALVTAGASAAAAIVYLAHKGNVRANWLAICQQFDSFCERISGSLIG 164          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U497F_RICCO (UPF0497 membrane protein 15 OS=Ricinus communis GN=RCOM_0770240 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.867e-11
Identity = 41/138 (29.71%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   87 LRVLLFAATLVSVIVMATAKQTE---LVTPPGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            LR + F AT  + IVMA  ++T+   + T    PI+ +V AKF  +PAF++FV A  +  +++++ M+A  + V K        +  A  D++                 +G  GN H++W KIC+ +  +C H G+A
Sbjct:   30 LRFVAFLATAAATIVMAANRETKTFVVATIGSTPIKATVTAKFQHTPAFVFFVIANGMGSIHNLV-MIAGDTFVRKFDYKGLRWVTVAILDMLTAALISGGVNAAVFMAELGKNGNSHAKWNKICDRFGSFCDHGGAA 166          
BLAST of CX292135 vs. ExPASy Swiss-Prot
Match: U4977_ORYSJ (UPF0497 membrane protein Os12g0610800 OS=Oryza sativa subsp. japonica GN=Os12g0610800 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.891e-11
Identity = 43/149 (28.86%), Postives = 73/149 (48.99%), Query Frame = 3
Query:   54 VRENYFGIDVGLRVLLFAATLVSVIVMATAKQ--TELVTPPGI-PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXXYIGLKGNDHSRWTKICNVYDKYCRHIGSA 491
            V++    +   +R  +F AT V+ ++M   KQ  T +V   G  P+  +  AKF D+PAF++FV A ++A  Y+++ ++    +  +  S    LL     D+V+L               +G  GN H+RW  IC+ +  +C H G A
Sbjct:   21 VKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAIVGTRPVTQTFTAKFKDTPAFVFFVIANAIASGYNLMVLVTRRILQRRAQSLSVHLL-----DMVILTLLATGSATAASMAQLGKNGNLHARWNPICDKFGSFCNHGGIA 164          
The following BLAST results are available for this feature:
BLAST of CX292135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
U497E_SOYBN1.681e-1130.50UPF0497 membrane protein 14 OS=Glycine max PE=2 SV... [more]
U497L_SORBI2.195e-1131.47UPF0497 membrane protein Sb10g008220 OS=Sorghum bi... [more]
U497F_RICCO2.867e-1129.71UPF0497 membrane protein 15 OS=Ricinus communis GN... [more]
U4977_ORYSJ4.891e-1128.86UPF0497 membrane protein Os12g0610800 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC04010H11SK FlavFr1 Citrus clementina cDNA clone C04010H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292135 ID=CX292135; Name=CX292135; organism=Citrus clementina; type=EST; length=605bp
AAACACATACTATGGCGTCTGAAGCTCCAGCGAAATATGAAGATCAAAGG
GCGGTGCGCGAAAACTATTTTGGCATCGATGTGGGTCTTAGAGTATTGCT
GTTTGCAGCAACGCTCGTTTCCGTAATCGTCATGGCTACCGCCAAGCAAA
CTGAGCTCGTAACCCCACCTGGGATTCCTATTAGAGTCAGCGTTAAAGCC
AAGTTTACCGATTCCCCGGCTTTCATATATTTTGTCGCGGCACTATCGGT
TGCTTGCCTATACAGTATCATCACAATGCTTGCATCACTTTCGGTGGTCT
CCAAGCCAGCTTCCGCAAAACGGCTGCTGCTCTATTTCGCATTCTGGGAC
GTGGTGATGTTGGGGATCGTAGCATCGGCAACTGGGGCATCGGGAGGGGT
GGCGTATATCGGATTAAAGGGCAACGACCACTCGAGATGGACAAAGATAT
GCAACGTTTACGACAAGTACTGCAGACATATAGGCAGCGCCACCGGGGTC
TCACTCCTCGCCGCTGTTCTTCTCGTGCTACTCTCCATGCTCTCCTCTTA
CTCCCTTTACTTGCGCATTCGTGATTGATCAGATCATTATTTAGATTATG
TATCT
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