CX292144

Overview
NameCX292144
Unique NameCX292144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: GRP78_ASPAW (78 kDa glucose-regulated protein homolog OS=Aspergillus awamori GN=bipA PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.940e-73
Identity = 142/219 (64.84%), Postives = 165/219 (75.34%), Query Frame = 3
Query:   24 ERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            E+AKRTLSS   T IEI++ + G DF  T+TRA+FEELNMDLF+K ++PVE+ L+D+K+ KS+V D+VLVGGSTRIPKVQ LL++FF GK+  K INPDE           +LSGE  E   D           GIET GGVMT LIPRNT IPT+K QIFST +DNQP VLIQVYEGER+ TKDNNLLGKFELTGIPPAPRGVPQI V FD+DANGIL
Sbjct:  312 EKAKRTLSSQMSTRIEIEAFHNGEDFSETLTRAKFEELNMDLFKKTLKPVEQVLKDAKVKKSEVDDIVLVGGSTRIPKVQALLEEFFGGKKASKGINPDEAVAFGAAVQGGVLSGE--EGTGDVVLMDVNPLTLGIETTGGVMTKLIPRNTVIPTRKSQIFSTAADNQPTVLIQVYEGERSLTKDNNLLGKFELTGIPPAPRGVPQIEVSFDLDANGIL 528          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.801e-72
Identity = 135/225 (60.00%), Postives = 165/225 (73.33%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R  CERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + D+ ++K+Q+ ++VLVGGSTRIPKVQQLL++FFNGKE  K +NPDE           ILSGEG E+ ++           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+LTGI PAPRG PQI V F++DANGIL+
Sbjct:  295 LRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSKGVNPDEAVAFGAAVQGSILSGEGGEETKEILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILN 519          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.801e-72
Identity = 136/225 (60.44%), Postives = 163/225 (72.44%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R  CERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + D+ + KSQ+ ++VLVGGSTRIPKVQQLL+DFF GKE  K +NPDE           ILSGEG ++ +D           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+L GIPPAPRG PQI V F++DANGIL+
Sbjct:  294 LRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLNGIPPAPRGTPQIEVTFEVDANGILN 518          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.779e-72
Identity = 135/225 (60.00%), Postives = 163/225 (72.44%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R  CERAKR LSS  Q  +EI+SL++G+D    +TRARFEELN DLFRK M PV+K + D+ + KSQ+ ++VLVGGSTRIPKVQQLL+DFF GKE  K +NPDE           ILSGEG ++ +D           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+LTG+PPAPRG PQI V F++DANGIL+
Sbjct:  294 LRRECERAKRALSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGVPPAPRGTPQIEVTFEVDANGILN 518          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.390e-71
Identity = 138/219 (63.01%), Postives = 166/219 (75.80%), Query Frame = 3
Query:   24 ERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            E+AKRTLSS   T IEIDS  +GIDF  +++RA+FEELNMDLF+K ++PV++ L D+K+   ++ DVV VGGSTRIPKVQ+L+++FFNGK++ K INPDE           +LSGE  E V+D           GIET+GGVMTTLI RNT IPT+K QIFST +DNQP VLIQVYEGERA  KDNNLLGKFELTGIPPAPRGVPQI V F +D+NGIL
Sbjct:  303 EKAKRTLSSQMSTRIEIDSFVDGIDFSESLSRAKFEELNMDLFKKTLKPVQQVLDDAKMKPDEIDDVVFVGGSTRIPKVQELIENFFNGKKISKGINPDEAVAFGAAVQGGVLSGE--EGVEDIVLIDVNPLTLGIETSGGVMTTLIKRNTPIPTQKSQIFSTAADNQPVVLIQVYEGERAMAKDNNLLGKFELTGIPPAPRGVPQIEVTFTLDSNGIL 519          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.816e-71
Identity = 140/224 (62.50%), Postives = 164/224 (73.21%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++   E+AKR LSS   T IEIDS  +GID   T+TRA+FEELN+DLF+K ++PVEK L+DS ++K  V D+VLVGGSTRIPKVQQLL+ +F+GK+  K INPDE           +LSGE  E V+D           GIET GGVMT LI RNT IPTKK QIFST  DNQP V+I+VYEGERA +KDNNLLGKFELTGIPPAPRGVPQI V F +DANGIL
Sbjct:  308 LKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGIL 529          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.816e-71
Identity = 134/225 (59.56%), Postives = 163/225 (72.44%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R   ERAKR LS+  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K + D+ ++KSQ+H++VLVGGSTRIPKVQQLL+D+FNGKE  K +NPDE           ILSGEG ++ +D           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+L GIP APRG PQI V F++DANGIL+
Sbjct:  292 LRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLKDYFNGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIPSAPRGTPQIEVTFEVDANGILN 516          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 266.929 bits (681), Expect = 6.900e-71
Identity = 133/225 (59.11%), Postives = 163/225 (72.44%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R   ERAKR LS+  Q  +EI+SL++G DF   +TRARFEELN DLFRK M PV+K + D+ ++KSQ+H++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+L GI PAPRG PQI V F++DANGIL+
Sbjct:  292 LRREAERAKRALSNQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLNGIAPAPRGTPQIEVTFEVDANGILN 516          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.012e-71
Identity = 139/224 (62.05%), Postives = 161/224 (71.88%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++   E+AKR LSS   T IEIDS  +GID   T+TRA+FEELN+DLF+K ++PVEK L D+ ++K  + D VLVGGSTRIPKVQQLL+ FFNGK+  K INPDE           +LSGE  E V+D           GIET GGVMT LI RNT IPTKK QIFST  DNQP V I+VYEGERA +KDNNLLGKFELTGIPPAPRG+PQI V F +DANGIL
Sbjct:  294 LKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLEDAGLEKKDIDDFVLVGGSTRIPKVQQLLESFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDIVLLDVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVQIKVYEGERAMSKDNNLLGKFELTGIPPAPRGIPQIEVTFALDANGIL 515          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.177e-70
Identity = 133/225 (59.11%), Postives = 164/225 (72.89%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R   ERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN DLFRK M PV+K + D+ ++K+Q+ ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D           GIET GGVMT LIPRNT IPTKK Q+F+TY D Q  V IQV+EGER+ TKD  LLGKF+LTGI PAPRG PQI V F++DANGIL+
Sbjct:  296 LRREAERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKTQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTIQVFEGERSLTKDCRLLGKFDLTGIAPAPRGTPQIEVTFEVDANGILN 520          
The following BLAST results are available for this feature:
BLAST of CX292144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_ASPAW1.940e-7364.8478 kDa glucose-regulated protein homolog OS=Asperg... [more]
BIP_SPIOL2.801e-7260.00Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
BIP1_ARATH2.801e-7260.44Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP2_ARATH4.779e-7260.00Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
GRP78_PICAN1.390e-7163.0178 kDa glucose-regulated protein homolog OS=Pichia... [more]
GRP78_YEAST1.816e-7162.5078 kDa glucose-regulated protein homolog OS=Saccha... [more]
BIP3_MAIZE1.816e-7159.56Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE6.900e-7159.11Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
GRP78_CANGA9.012e-7162.0578 kDa glucose-regulated protein homolog OS=Candid... [more]
BIP4_TOBAC1.177e-7059.11Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC04011A09SK FlavFr1 Citrus clementina cDNA clone C04011A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292144 ID=CX292144; Name=CX292144; organism=Citrus clementina; type=EST; length=684bp
CTCGTGCCGTGCGGACGGCATGTGAGCGGGCTAAGAGGACTCTATCTTCT
ACATCACAGACGACAATTGAGATTGATTCGCTCTATGAAGGCATTGACTT
CTATGCGACAATTACTAGGGCTAGGTTTGAAGAATTGAACATGGATTTGT
TCAGAAAATGTATGGAACCTGTGGAGAAATGTCTTCGCGACTCAAAAATT
GATAAGAGCCAGGTTCATGATGTTGTTCTTGTTGGTGGCTCAACAAGAAT
TCCAAAAGTTCAACAATTGTTGCAAGACTTCTTTAACGGGAAGGAACTGT
GCAAGAGCATAAACCCTGATGAGGCTGTAGCTTATGGAGCTGCTGTGCAG
GCTGCTATTTTGAGCGGTGAAGGGAATGAGAAGGTTCAAGATTTGCTGCT
GCTTGATGTTACTCCTCTGAGCCTCGGTATTGAGACTGCTGGCGGTGTAA
TGACAACCTTGATTCCAAGGAACACGACAATTCCTACAAAGAAAGAGCAA
ATTTTCTCAACTTATTCAGACAATCAGCCTGGTGTGTTGATTCAGGTGTA
TGAAGGTGAAAGGGCTAGAACAAAAGATAACAATCTGCTTGGGAAATTCG
AGCTCACGGGCATTCCTCCGGCACCAAGAGGTGTTCCTCAGATCAATGTG
TGCTTTGACATTGATGCTAATGGTATATTGCATG
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