CX292144

Overview
NameCX292144
Unique NameCX292144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_RHIME (Chaperone protein dnaK OS=Rhizobium meliloti GN=dnaK PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 106/228 (46.49%), Postives = 139/228 (60.96%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS+ QT I +  +             ++RA+FE L  DL +K + P +  L+D+ +  +++ +VVLVGG TR+PKVQ+ ++  F GKE  K +NPDE           +L G+    V+D           GIET GGV T LI RNTTIPTKK Q+FST  DNQ  V I+V +GER    DN LLG+F+L GIPPAPRGVPQI V FDIDANGI+
Sbjct:  257 LKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTMKLSRAKFESLVEDLIQKTIAPCKAALKDAGVSAAEIDEVVLVGGMTRMPKVQETVKQLF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADDNQSAVTIRVSQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDIDANGIV 479          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_MYXXD (Chaperone protein dnaK OS=Myxococcus xanthus (strain DK 1622) GN=dnaK PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 106/229 (46.29%), Postives = 136/229 (59.39%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A ERAK  LSS  +T + +  +            T+ RA FE L  DL  + +EP    L+D+ I   Q++ V+LVGG TR+P+VQQ +++FF G+E  K INPDE           +L GE    V+D           G+ETAGGV T +I +NTTIP KK Q+FST  DNQP V + V +GER    DN  L +FEL GIPPAPRGVPQI V FDIDANGI+H
Sbjct:  261 LKEAAERAKHELSSAPETEVNLPFITADASGPKHLTETVDRATFEALVTDLIDRTIEPCRIALKDAGIPAQQINQVLLVGGMTRMPRVQQKVKEFF-GREPHKGINPDEVVAVGAAIQGGVLKGE----VKDVLLLDVTPLSLGVETAGGVFTKIIDKNTTIPCKKSQVFSTAVDNQPLVSVHVLQGEREMAADNKTLARFELVGIPPAPRGVPQIEVSFDIDANGIVH 484          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_METTP (Chaperone protein dnaK OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=dnaK PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 106/229 (46.29%), Postives = 139/229 (60.70%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            +R A E AK  LSS  QTTI +  +            TITRA+ EEL  D+  +C  P+E+ L D+K+ KS +  ++LVGG TR+P VQ+ ++    GK++ + ++P E           +L+GE    V+D           G+ET GG+MT LI RNTTIPT+K QIF+T +DNQ  V I V +GER   KDN  LG+F L GIPPAPRG+PQI V FDIDANGILH
Sbjct:  237 LREAAEVAKIELSSMLQTTINLPYITADASGPKHLNMTITRAKLEELIQDVLERCRGPMEQALSDAKLSKSDIDKIILVGGPTRMPAVQEFVKRVM-GKDVERGVDPMECVAMGAAIQAGVLAGE----VKDILLLDVTPLSLGVETLGGIMTRLIERNTTIPTRKSQIFTTAADNQTSVEIHVLQGERPLAKDNISLGRFTLVGIPPAPRGIPQIEVTFDIDANGILH 460          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_LISW6 (Chaperone protein dnaK OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 103/228 (45.18%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK+ LS  + T I +  +  G    +    T+TRA+F+EL  DL  + + P  + L+D+ +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D           GIET GGVMT LI RNTTIPT K Q FST +DNQP V I V +GER   KDN  LG+F+L  IPPAPRG+PQI V FDID NGI+
Sbjct:  232 LKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEVTLTRAKFDELTHDLVERTIAPTRQALKDANLSASDIDQVILVGGSTRIPAVQETIKKEL-GKEPHKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVMTPLIERNTTIPTSKSQTFSTAADNQPAVDIHVLQGERPMAKDNKTLGRFQLADIPPAPRGIPQIEVLFDIDKNGIV 454          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_HELHP (Chaperone protein dnaK OS=Helicobacter hepaticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 105/228 (46.05%), Postives = 140/228 (61.40%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E AK+ LSS  +T I +  +             ITRA+FE L  DL    ++ +E  ++D+ + +S + +VV+VGGSTRIPKVQ+ ++ F + K+L KS+NPDE           +L G+    V+D           GIETAGG+ T ++ R  TIPTKK QIFSTY DNQP V I V +GER   +DN  LG+F+L+GIP APRGVPQI V FDIDANGIL
Sbjct:  256 LKDAAENAKKELSSAQETEINLPFITADASGPKHLVKKITRAKFESLIDDLIEDTIKKIEFVIKDAGLSQSDISEVVMVGGSTRIPKVQERVKAFIS-KDLNKSVNPDEVVAVGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETAGGISTKVVERGVTIPTKKTQIFSTYEDNQPAVSINVLQGERELARDNKSLGRFDLSGIPAAPRGVPQIEVTFDIDANGIL 478          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_FLAPJ (Chaperone protein dnaK OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 104/228 (45.61%), Postives = 141/228 (61.84%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS+++T I +  +             +TRA+FE+L+  L ++ MEPV K L+D+ +    + +V+LVGGSTR+P++   ++ FF GK+  K +NPDE           +LSG+    V+D           GIET GGVMT LI  NTTIPTKK QIFST +D+QP V + V +G RA   DN  +G+F L GIPPAPRGVPQI V FDIDANGI+
Sbjct:  256 IKEAAEKAKIELSSSAETEINLPYVTATASGPKHLVKKLTRAKFEQLSDTLVKRSMEPVAKALKDAGLTVKDIDEVILVGGSTRMPRIADEVEKFF-GKKASKGVNPDEVVAIGAAIQGGVLSGD----VKDVLLLDVTPLSLGIETMGGVMTILIESNTTIPTKKSQIFSTAADSQPTVELHVLQGARAMAVDNKTIGRFNLDGIPPAPRGVPQIEVAFDIDANGII 478          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_BACWK (Chaperone protein dnaK OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 103/229 (44.98%), Postives = 141/229 (61.57%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK+ LS  +QT I +  +  G    +    T+TRA+FEE++  L  + +EP  + L+D+    S++  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +L+G+    V+            GIET GGV T LI RNTTIPT K Q+FST +DNQP V I V +GER  + DN  LG+F+LT +PPAPRG+PQI V FDIDANGI++
Sbjct:  232 LKDAAEKAKKDLSGVTQTQISLPFISAGAAGPLHLELTLTRAKFEEISAGLVERTLEPTRRALKDAGFAPSELDKVILVGGSTRIPAVQEAIKRE-TGKEPYKGVNPDEVVALGAAVQGGVLTGD----VEGVLLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMSADNKTLGRFQLTDLPPAPRGIPQIEVTFDIDANGIVN 455          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_BACSU (Chaperone protein dnaK OS=Bacillus subtilis GN=dnaK PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 105/229 (45.85%), Postives = 140/229 (61.14%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK+ LS  S T I +  +  G    +    T+TRA+FEEL+  L  + M PV + L+D+ +  S++  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+    V+D           GIET GGV T LI RNTTIPT K Q+FST +DNQ  V I V +GER  + DN  LG+F+LT IPPAPRGVPQI V FDID NGI++
Sbjct:  232 LKDAAEKAKKDLSGVSSTQISLPFITAGEAGPLHLELTLTRAKFEELSSHLVERTMGPVRQALQDAGLSASEIDKVILVGGSTRIPAVQEAIKKE-TGKEAHKGVNPDEVVALGAAIQGGVITGD----VKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQTAVDIHVLQGERPMSADNKTLGRFQLTDIPPAPRGVPQIEVSFDIDKNGIVN 455          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_STAHJ (Chaperone protein dnaK OS=Staphylococcus haemolyticus (strain JCSC1435) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 103/229 (44.98%), Postives = 141/229 (61.57%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK+ LS  SQT I +  +  G    +    ++TR++FEEL   L R+ MEP  + L+D+ +  S++ +V+LVGGSTRIP VQ+ ++    GK+  K +NPDE           +++G+    V+D           GIE  GG M TLI RNTTIPT K Q++ST +DNQP V I V +GER    DN  LG+F+LT IPPAPRGVPQI V FDID NGI++
Sbjct:  232 LKDAAEKAKKDLSGVSQTQISLPFISAGESGPLHLEISLTRSKFEELADSLIRRTMEPTRQALKDAGLSTSEIDEVILVGGSTRIPAVQEAVKKEI-GKDPHKGVNPDEVVAMGAAIQGGVITGD----VKDVVLLDVTPLSLGIEIMGGRMNTLIERNTTIPTSKSQVYSTAADNQPAVDIHVLQGERPMASDNKTLGRFQLTDIPPAPRGVPQIEVTFDIDKNGIVN 455          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_SINMW (Chaperone protein dnaK OS=Sinorhizobium medicae (strain WSM419) GN=dnaK PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 106/228 (46.49%), Postives = 139/228 (60.96%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS+ QT I +  +             ++RA+FE L  DL +K + P +  L+D+ +  +++ +VVLVGG TR+PKVQ+ ++  F GKE  K +NPDE           +L G+    V+D           GIET GGV T LI RNTTIPTKK Q+FST  DNQ  V I+V +GER    DN LLG+F+L GIPPAPRGVPQI V FDIDANGI+
Sbjct:  257 LKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTMKLSRAKFESLVDDLIQKTIAPCKAALKDAGVSAAEIDEVVLVGGMTRMPKVQETVKQLF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQVFSTADDNQSAVTIRVSQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDIDANGIV 479          
The following BLAST results are available for this feature:
BLAST of CX292144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHIME1.829e-4746.49Chaperone protein dnaK OS=Rhizobium meliloti GN=dn... [more]
DNAK_MYXXD1.829e-4746.29Chaperone protein dnaK OS=Myxococcus xanthus (stra... [more]
DNAK_METTP1.829e-4746.29Chaperone protein dnaK OS=Methanosaeta thermophila... [more]
DNAK_LISW61.829e-4745.18Chaperone protein dnaK OS=Listeria welshimeri sero... [more]
DNAK_HELHP1.829e-4746.05Chaperone protein dnaK OS=Helicobacter hepaticus G... [more]
DNAK_FLAPJ1.829e-4745.61Chaperone protein dnaK OS=Flavobacterium psychroph... [more]
DNAK_BACWK1.829e-4744.98Chaperone protein dnaK OS=Bacillus weihenstephanen... [more]
DNAK_BACSU1.829e-4745.85Chaperone protein dnaK OS=Bacillus subtilis GN=dna... [more]
DNAK_STAHJ2.388e-4744.98Chaperone protein dnaK OS=Staphylococcus haemolyti... [more]
DNAK_SINMW2.388e-4746.49Chaperone protein dnaK OS=Sinorhizobium medicae (s... [more]

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Properties
Property NameValue
Genbank descriptionC04011A09SK FlavFr1 Citrus clementina cDNA clone C04011A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292144 ID=CX292144; Name=CX292144; organism=Citrus clementina; type=EST; length=684bp
CTCGTGCCGTGCGGACGGCATGTGAGCGGGCTAAGAGGACTCTATCTTCT
ACATCACAGACGACAATTGAGATTGATTCGCTCTATGAAGGCATTGACTT
CTATGCGACAATTACTAGGGCTAGGTTTGAAGAATTGAACATGGATTTGT
TCAGAAAATGTATGGAACCTGTGGAGAAATGTCTTCGCGACTCAAAAATT
GATAAGAGCCAGGTTCATGATGTTGTTCTTGTTGGTGGCTCAACAAGAAT
TCCAAAAGTTCAACAATTGTTGCAAGACTTCTTTAACGGGAAGGAACTGT
GCAAGAGCATAAACCCTGATGAGGCTGTAGCTTATGGAGCTGCTGTGCAG
GCTGCTATTTTGAGCGGTGAAGGGAATGAGAAGGTTCAAGATTTGCTGCT
GCTTGATGTTACTCCTCTGAGCCTCGGTATTGAGACTGCTGGCGGTGTAA
TGACAACCTTGATTCCAAGGAACACGACAATTCCTACAAAGAAAGAGCAA
ATTTTCTCAACTTATTCAGACAATCAGCCTGGTGTGTTGATTCAGGTGTA
TGAAGGTGAAAGGGCTAGAACAAAAGATAACAATCTGCTTGGGAAATTCG
AGCTCACGGGCATTCCTCCGGCACCAAGAGGTGTTCCTCAGATCAATGTG
TGCTTTGACATTGATGCTAATGGTATATTGCATG
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