CX292144

Overview
NameCX292144
Unique NameCX292144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_HAEDU (Chaperone protein dnaK OS=Haemophilus ducreyi GN=dnaK PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 105/229 (45.85%), Postives = 138/229 (60.26%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            V+ A E+AK  LSS  +T + +  +             +TRA+ E L  DL  + +EP++  L D+ +  S+++DV+LVGG TR+P VQ+ + DFF GKE  K +NPDE           +L+G+    V D           GIET GGVMT+LI +NTTIPTKK Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDANGI++
Sbjct:  261 VKEAAEKAKIELSSAQETEVNLPYITADATGPKHLNIKVTRAKLEALVEDLVSRSLEPLKTALADAGLSVSEINDVILVGGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD----VTDVLLLDVTPLSLGIETMGGVMTSLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLEGINPAPRGMPQIEVTFDIDANGIIN 484          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_GLUDA (Chaperone protein dnaK OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 103/228 (45.18%), Postives = 138/228 (60.53%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS+ +T I +  +             ++RA+ E L  DL ++ MEP    L+D+ +  +++ +V+LVGG TR+PKV + ++ FF GKE  +++NPDE           +L G+    V+D           GIET GGV T LI RNTTIPTKK Q FST  DNQ  V I+V++GER    DN LLG F+LTGI PAPRGVPQI V FDIDANGI+
Sbjct:  257 LKEAAEKAKIELSSSKETEINLPFITADASGPKHLVLKLSRAKLESLVDDLIQRTMEPCRAALKDASVSAAEIDEVILVGGMTRMPKVIEAVKQFF-GKEPARNVNPDEVVAIGAAVQGAVLKGD----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTAEDNQGAVTIKVFQGEREMAADNKLLGNFDLTGIAPAPRGVPQIEVTFDIDANGIV 479          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_DESDG (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain G20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 107/229 (46.72%), Postives = 141/229 (61.57%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK+ LS++ +T I +  +             ++RA+ E+L  DL  + +EP  K L D+ +  S+V +VVLVGG TR+P VQ+ + DFF GKE  +S+NPDE           IL+G+    V+D           GIET GGV T LI RNTTIPTKK Q F+T +DNQP V I V +GER    DN  LG+FELTGIP APRG+PQI V FDIDANGI++
Sbjct:  256 LKEAAEKAKKDLSTSMETEINLPFITADQTGPKHLMIKLSRAKLEKLVEDLVERTIEPCRKALSDAGLSASEVDEVVLVGGMTRMPLVQKKVADFF-GKEPNRSMNPDEVVSMGAAIQGGILAGD----VKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFTTAADNQPSVSIHVMQGERPMASDNMTLGRFELTGIPAAPRGMPQIEVSFDIDANGIVN 479          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_AQUPY (Chaperone protein dnaK (Fragment) OS=Aquifex pyrophilus GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 106/231 (45.89%), Postives = 140/231 (60.61%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLY------EGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK+ LS   +T I +  +       + +     +TRAR EE+  DL  + ++ V++ L D+ +  S + +VVLVGGSTRIP VQQ +++FF GKE  K +NPDE           +L+GE    V++           G+ET GGVMT LIPRNT IP KK ++F+T  D Q  V I V  GER   KDN  L KF LTGIPPAPRGVP+I VCFDIDA+GILH
Sbjct:  261 LKEAAEQAKKELSFKMETEINLPFITIDPNTNQPLHLQKKLTRARLEEMINDLIDRTIDIVKQALEDANVKPSDIDEVVLVGGSTRIPLVQQKIKEFF-GKEPHKGLNPDEVVAMGAAIQAGVLAGE----VKEIVLVDVTPLELGVETYGGVMTVLIPRNTPIPVKKSKVFTTAHDYQTEVEIHVLHGERPLAKDNKSLAKFYLTGIPPAPRGVPKIEVCFDIDADGILH 486          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_APHHA (Chaperone protein dnaK OS=Aphanothece halophytica GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 109/233 (46.78%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIE---IDSLYEG------IDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            +R A ERAK  LS+   T+I    I +  +G            ++RA+F EL+  L  K ++P+++ + DS +   Q+  ++LVGGSTRIP+VQ+ L+ FFNGKE  +SINPDE           +L  E  ++V+D           GIET G V T +I RNTTIPT K Q+FST SD Q  V I V +GERA   DN  LGKF LTGIP APRGVPQI V FDID NGIL
Sbjct:  256 LREAAERAKIELSTRPTTSINLPFITAFSKGGGEVGPKHLKLNLSRAKFNELSRPLVEKTIDPLKQAIEDSGLSVDQIDRILLVGGSTRIPEVQEALKKFFNGKEPDRSINPDEAVALGAAIQGGVLGQE--QEVEDLLLLVVIPLSLGIETLGEVFTKVIERNTTIPTSKSQVFSTASDGQTSVEIHVLQGERAMANDNKTLGKFLLTGIPAAPRGVPQIEVSFDIDVNGIL 486          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_ACICJ (Chaperone protein dnaK OS=Acidiphilium cryptum (strain JF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 104/228 (45.61%), Postives = 136/228 (59.65%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS+ +T I +  +             +TRA+ E L  DL  + + P    L+D+ +   ++ +V+LVGG TR+PKV + ++ FF GKE  +++NPDE           +L G+    V+D           GIET GGV T LI RNTTIPTKK Q FST  DNQ  V I+VY+GER    DN LLG F+LTGIPPAPRGVPQI V FDIDANGI+
Sbjct:  257 LKEAAEKAKIELSSSKETEINLPFITADASGPKHLVMKLTRAKLESLVDDLVERTLGPCRAALKDAGVTAGEIDEVILVGGMTRMPKVIETVKTFF-GKEPARNVNPDEVVAIGAAIQGAVLKGD----VKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFSTADDNQTAVTIKVYQGEREMAADNKLLGNFDLTGIPPAPRGVPQIEVTFDIDANGIV 479          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_THERP (Chaperone protein dnaK OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dnaK PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 107/228 (46.93%), Postives = 138/228 (60.53%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGIL 680
            ++ A E+AK  LSS  QT I +  +            T+TR++ E+L  DL  K + P+E+ L+D+ +    V +VVLVGG TR+P +Q+ +Q+FF GKE  K INPDE           +L+GE    V++            IET GGV T +IPRNTTIPT+K QIF+T SDNQ  V I V +GER    DN  LG+F L GIPPAPRGVP+I V FDIDANGIL
Sbjct:  257 LKEAAEKAKIELSSVQQTEINLPFITADATGPKHLVKTLTRSKLEQLVADLVEKTIPPMEQALKDAGLSPRDVDEVVLVGGQTRMPLIQRKVQEFF-GKEPHKGINPDEVVAIGAAIQAGVLAGE----VKEVLLLDVTPLTLAIETLGGVATPIIPRNTTIPTRKSQIFTTASDNQTQVEIHVVQGERPMAADNKTLGRFILDGIPPAPRGVPKIEVTFDIDANGIL 479          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_SHISS (Chaperone protein dnaK OS=Shigella sonnei (strain Ss046) GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 105/229 (45.85%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILH
Sbjct:  262 LKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILH 485          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_SHIFL (Chaperone protein dnaK OS=Shigella flexneri GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 105/229 (45.85%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILH
Sbjct:  262 LKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILH 485          
BLAST of CX292144 vs. ExPASy Swiss-Prot
Match: DNAK_SHIF8 (Chaperone protein dnaK OS=Shigella flexneri serotype 5b (strain 8401) GN=dnaK PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 105/229 (45.85%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    9 VRTACERAKRTLSSTSQTTIEIDSLYEGID----FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXGIETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILH 683
            ++ A E+AK  LSS  QT + +  +             +TRA+ E L  DL  + +EP++  L+D+ +  S + DV+LVGG TR+P VQ+ + +FF GKE  K +NPDE           +L+G+    V+D           GIET GGVMTTLI +NTTIPTK  Q+FST  DNQ  V I V +GER R  DN  LG+F L GI PAPRG+PQI V FDIDA+GILH
Sbjct:  262 LKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILH 485          
The following BLAST results are available for this feature:
BLAST of CX292144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_HAEDU1.185e-4645.85Chaperone protein dnaK OS=Haemophilus ducreyi GN=d... [more]
DNAK_GLUDA1.185e-4645.18Chaperone protein dnaK OS=Gluconacetobacter diazot... [more]
DNAK_DESDG1.185e-4646.72Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]
DNAK_AQUPY1.185e-4645.89Chaperone protein dnaK (Fragment) OS=Aquifex pyrop... [more]
DNAK_APHHA1.185e-4646.78Chaperone protein dnaK OS=Aphanothece halophytica ... [more]
DNAK_ACICJ1.185e-4645.61Chaperone protein dnaK OS=Acidiphilium cryptum (st... [more]
DNAK_THERP1.548e-4646.93Chaperone protein dnaK OS=Thermomicrobium roseum (... [more]
DNAK_SHISS1.548e-4645.85Chaperone protein dnaK OS=Shigella sonnei (strain ... [more]
DNAK_SHIFL1.548e-4645.85Chaperone protein dnaK OS=Shigella flexneri GN=dna... [more]
DNAK_SHIF81.548e-4645.85Chaperone protein dnaK OS=Shigella flexneri seroty... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04011A09SK FlavFr1 Citrus clementina cDNA clone C04011A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292144 ID=CX292144; Name=CX292144; organism=Citrus clementina; type=EST; length=684bp
CTCGTGCCGTGCGGACGGCATGTGAGCGGGCTAAGAGGACTCTATCTTCT
ACATCACAGACGACAATTGAGATTGATTCGCTCTATGAAGGCATTGACTT
CTATGCGACAATTACTAGGGCTAGGTTTGAAGAATTGAACATGGATTTGT
TCAGAAAATGTATGGAACCTGTGGAGAAATGTCTTCGCGACTCAAAAATT
GATAAGAGCCAGGTTCATGATGTTGTTCTTGTTGGTGGCTCAACAAGAAT
TCCAAAAGTTCAACAATTGTTGCAAGACTTCTTTAACGGGAAGGAACTGT
GCAAGAGCATAAACCCTGATGAGGCTGTAGCTTATGGAGCTGCTGTGCAG
GCTGCTATTTTGAGCGGTGAAGGGAATGAGAAGGTTCAAGATTTGCTGCT
GCTTGATGTTACTCCTCTGAGCCTCGGTATTGAGACTGCTGGCGGTGTAA
TGACAACCTTGATTCCAAGGAACACGACAATTCCTACAAAGAAAGAGCAA
ATTTTCTCAACTTATTCAGACAATCAGCCTGGTGTGTTGATTCAGGTGTA
TGAAGGTGAAAGGGCTAGAACAAAAGATAACAATCTGCTTGGGAAATTCG
AGCTCACGGGCATTCCTCCGGCACCAAGAGGTGTTCCTCAGATCAATGTG
TGCTTTGACATTGATGCTAATGGTATATTGCATG
back to top