CX292148

Overview
NameCX292148
Unique NameCX292148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_BREBN (Riboflavin biosynthesis protein ribBA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ribBA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.193e-77
Identity = 144/231 (62.34%), Postives = 182/231 (78.79%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVDDDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA LAG  PA V+CE++++DGSMARLP+L E A+R +LK+I+IADLI YR + + +V +    ++PT +G F    Y + LDG EH+A++KG+IG  + ILVRVHSECLTGDIFGS RCDCG QL  A++QIEA GRG+L+Y+R  EGRGIGL +KLRAY LQ++G DTVEANE+LG   D R+YGIGAQ+LRDLGV+ M+L+TNNP K  GL GYGLAV  RVPL
Sbjct:  143 EAAVDLARLAGGIPAGVICEIMNEDGSMARLPQLVEIARRFDLKLITIADLIAYRMRTESMVKKEIEVQLPTAYGDFRIAAYTNELDGKEHVALIKGEIGPDEPILVRVHSECLTGDIFGSYRCDCGPQLHAALEQIEANGRGILLYMR-QEGRGIGLINKLRAYKLQEEGLDTVEANEKLGFAADLRDYGIGAQILRDLGVQRMRLLTNNPRKIRGLTGYGLAVEERVPL 372
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.858e-77
Identity = 142/237 (59.92%), Postives = 181/237 (76.37%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR FA   +L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.157e-76
Identity = 143/237 (60.34%), Postives = 180/237 (75.95%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA   +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA   +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBT (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA   +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBP (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA   +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCBO (Riboflavin biosynthesis protein ribBA OS=Mycobacterium bovis GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.973e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA   +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRHGEFRAIGYTSIYEDVEHVALVRGEIAGPNADGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCUA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium ulcerans (strain Agy99) GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.577e-76
Identity = 142/237 (59.92%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR FA    L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+ Y LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSRKDEGSMAQTDELRVFADEHGLALITIADLIEWRRKHEKHIERVAEARIPTRRGEFRAIGYTSIYENVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGSQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQTYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
[Close]
BLAST of CX292148 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.577e-76
Identity = 141/237 (59.49%), Postives = 180/237 (75.95%), Query Frame = 2 
Query:    2 EASVDLAVLAGFDPAAVLCEVVD--DDGSMARLPKLREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPL 694
            EA+VDLA +AG  PA  +CE+V   D+GSMA+  +LR FA   +L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL
Sbjct:  146 EAAVDLARMAGLQPAGAICEIVSQKDEGSMAQTDELRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPL 382
The following BLAST results are available for this feature:
BLAST of CX292148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
RIBBA_BREBN5.193e-7762.34Riboflavin biosynthesis protein ribBA OS=Brevibaci... [more]
RIBBA_MYCPA8.858e-7759.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM1.157e-7660.34Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTU1.973e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTA1.973e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBT1.973e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBP1.973e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCBO1.973e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCUA2.577e-7659.92Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA12.577e-7659.49Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionC04011B02SK FlavFr1 Citrus clementina cDNA clone C04011B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292148 ID=CX292148; Name=CX292148; organism=Citrus clementina; type=EST; length=702bp
AGAAGCTTCTGTTGATCTTGCTGTGCTAGCTGGATTTGACCCTGCAGCAG
TTTTGTGTGAGGTTGTGGATGATGATGGTTCCATGGCTAGATTACCAAAG
CTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTGA
TTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCTG
CTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAGA
TCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTGG
GGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAG
ATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCA
ATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGG
TCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACT
TGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTG
CCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCT
TGGTGTTCGAACAATGAAGCTGATGACAAACAACCCTTCGAAGTATGTTG
GACTCAAGGGTTATGGTTTGGCTGTTGCAGGAAGGGTTCCCCTATAACTC
CC
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